Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr1g3164 | ATGCCCAACGGCTCTCTTGACAGATATATTTCCTCTGGAGAAAATCACATTTCCTTAACTTTTAGGCAAATGTACGAGATATCACTTGCAGTGGCTCGTGGAATTGCTTATTTGCATCAAGGTTGTGACATGCAAATTTTACATTTTGATATCAAGCCTCATAACATACTTCTTGACAAGGACTTCACTGCCAAAGTTTCAGACTTTGGTCTTGCAAAACTTTATCCTGTTGACAATAGCATTGTAACTTTGACTGCTGCAAGAGGAACGATTGGTTACATGGCTCCAGAACTGTTCTACAAAAATATTGGTGGAGTTTCCTATAAGGCTGATGTATATAGTTTTGGAATGCTCTTAATGGAAATAGCAAACCGGAGAAGAAATTTGAACTCAAATGCAGATAAGTCAAGCCAAATTTTCTTTCCCTATTGGATTTACAATGAATTGATTGAAGAAAGGGAGATAGAAATATTGGGAGAAGCTACAGACGACGAAAAGAAAAATGTGAAGAAGATGTTCATAATTGCTTTATGGTGCATACAATTAAACCCAAATGATCGTCCTTCAATGGACAAGGTAATAGAAATGCTTGAAGGAGAAATTGAAGACATTGAAATTCCTCCAAAACCTTCTCCATATCCAAATGAAGTTGTTCAAGATAATGGAATAAGCTCTAGTGAATCTGTATCGGATGACGATGTCACCGACTCGATTAGTTTTGTTGGGGAAACTATAGAAGATCCTTTATTATAG | 753 | 0.3652 | MPNGSLDRYISSGENHISLTFRQMYEISLAVARGIAYLHQGCDMQILHFDIKPHNILLDKDFTAKVSDFGLAKLYPVDNSIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEIANRRRNLNSNADKSSQIFFPYWIYNELIEEREIEILGEATDDEKKNVKKMFIIALWCIQLNPNDRPSMDKVIEMLEGEIEDIEIPPKPSPYPNEVVQDNGISSSESVSDDDVTDSISFVGETIEDPLL* | 251 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr1g3164 | 250 | SUPERFAMILY | Protein kinase-like (PK-like) | 1 | 198 | IPR011009 | - | |
| Tpr1g3164 | 250 | MobiDBLite | consensus disorder prediction | 208 | 250 | - | - | |
| Tpr1g3164 | 250 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 210 | - | - | |
| Tpr1g3164 | 250 | MobiDBLite | consensus disorder prediction | 217 | 237 | - | - | |
| Tpr1g3164 | 250 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 46 | 58 | IPR008271 | GO:0004672|GO:0006468 | |
| Tpr1g3164 | 250 | Pfam | Protein kinase domain | 1 | 195 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Tpr1g3164 | 250 | PANTHER | STRESS-INDUCED RECEPTOR-LIKE KINASE | 1 | 226 | - | - | |
| Tpr1g3164 | 250 | SMART | serkin_6 | 1 | 197 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Tpr1g3164 | 250 | ProSiteProfiles | Protein kinase domain profile. | 1 | 201 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Tpr1g3164 | 250 | PANTHER | RUST RESISTANCE KINASE LR10-RELATED | 1 | 226 | IPR045874 | GO:0004672 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr1g3164 | Tpr-Chr1 | 36104743 | 36106152 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr1g3164 | 1 | 210 | Receptor kinase-like Gene Family | AT4G18250 | 48.848 | 2.98e-68 | 221 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_LRK10L-2 | Tpr1g3164 | Pkinase | 8.8e-30 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr1g3164 | - | - | mtr:MTR_1g027050 | 435.647 |