Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3162 ATGGAACCATTCTTATGCTTCCTCCAAATTGTTATGCTTGTTGTTTTGATACTACTGCATCATAATCATCAAACATGTGATGCAAAAACTACTAATAGTAATAACCAGAAAAATTGTACACCTTCTTCATGTGGTAAAATCACAAACATAAAATATCCGTTTCGACTTAAGGATGATCCAACAGCCTGTGGTGATCCGAGATACGAGTTATCCTGCGAAAACAACATCACAACATTAGCTCTGCTTTCGGGTAAATACTATGTCAAATCAATCGACTACAAAAACTACACAATTCGGTTAGTTGATCCTGGAATTAAAGAGTCTAATTGCTCCTCCATTCCTCGCTATTACTTATATGCTTCAAATTTTACCGACGCTTACAATTATAGCTACAAGGAGGGTGCATATCAAACCTCACAGTACAGATTTCTTTCTAAGAAGACTGATGATCCTTCTCCTACTTTGTCAAGACCAATGTTCCAGCATGTAATATATATGAATTGTAGCAATCATATACGAGATGATGATCCTGTGTATGTGGATACAGCTTCTTGCATCAATGGTGGACATATATATGCCATTCCTGGGGATGTGAAAGTTGGAAATTTGACGGATGATGACTGTCGCGTGGAGGTTATTACCGCGATATCTTATTTCGGTTATAATTACAGCTCTGAGGATTGGGATATTCCGAATGAAAAGTATTCCTACAGTGAAATTCATAGGATGTTGGTGGGTGGATTTGAGGTATCTTGGATGAGTGCTCCTTGTCAAGATCTTTGTGGAGAACCAGATTGTTACTGGAGTGAAATAACTTCGAGTCTTCGATGCGACTCTGAACCTTGTAAAACTACAATGCGATTTACAGTTGCTTGTGGACCTCAATTTTGGCCGCGAATGTTTGTCGAAGGCATTTTGTACGGAATTGCTAAAGGACTGCTACAAACAATAGGTGTGGCAGTAGAAGGTGGATCTTATGGTATTTCTGAATCTAAACTTGGGATTGACATAGGAAGAATCATTGGAATGTATATTTTGCCATTATTCATTATAGTGAGATCGGCGTTGGGTCTCATAGTTTTCTTTACAAAATTGATACATATATATCGAACAAGGCATACATCGATGTATGAAAACATCGAAGACTTTCTTCAAGGAAATTCCCTTATTCCTATAAGATATTCATACAAAGAGATAAAGAAGATGACTAGAGATTTTAAGGACAAATTGGGTGAAGGAGGATATGGTAAGGTTTATAAGGGAATGCTTCGCAGTGGCCCTTTGGTAGCCATAAAGATGTTGGGAAAAGTTAAGGGTAATGGAAATGGGGAAGATTTTATTAGTGAAGTTGCAACTATAGGAAGAATACATCACACCAATGTAGTTCGACTTATTGGATTTTGTGTCGAGGGTTCAAAACGTGCTCTTGTTTATGATTTCATGCCCAATGGCTCTCTTGATAAGTATATTTCTTCTACAGAAGAACATATTTTCTTAACTTATAAGCAAATGTATGAGATATCTCTTGGAGTGGCTCGCGGAATTGCTTATTTGCATCAAGGTTGTGACATGCAAATTTTACATTTTGATATCAAGCCCCATAACATACTTCTTGACGAGGATTTCATCGCCAAAGTTTCAGACTTTGGTCTTGCAAAACTTTATCCTGTTGACAATAGCATTGTAACTTTGACTGGTGTAAGAGGAACATTTGGTTACATGGCTCCAGAATTGTTCTACAAAAATATTGGAAAAGTTTCTTATAAGGCTGATGTATATAGTTTTGGAATGCTCTTGATGGAAATAGCAAACAGAAGAAGAAATTTGAACACAAATGCAGATGATTCAAACCAAATTTTCTTTCCCTATTGGATTTACAATGAACTGATTGAAGAAAGGGAGATAGAAATATTGGGAGAAGCTACGGACGACGAAAAGAAAAATGTGAAGAAGATGTTCATAATTGCTCTATGGTGTATACAATTGAACCCCAATGATCGTCCTTCGATGGACAGAGTAATAGAGATGCTTGAAGGAGAAGCCGAAAACATTGAAATTCCTCCAAAACCTCCGAGTCCAACTGAAATTATCCAAGATATATAA 2103 0.3695 MEPFLCFLQIVMLVVLILLHHNHQTCDAKTTNSNNQKNCTPSSCGKITNIKYPFRLKDDPTACGDPRYELSCENNITTLALLSGKYYVKSIDYKNYTIRLVDPGIKESNCSSIPRYYLYASNFTDAYNYSYKEGAYQTSQYRFLSKKTDDPSPTLSRPMFQHVIYMNCSNHIRDDDPVYVDTASCINGGHIYAIPGDVKVGNLTDDDCRVEVITAISYFGYNYSSEDWDIPNEKYSYSEIHRMLVGGFEVSWMSAPCQDLCGEPDCYWSEITSSLRCDSEPCKTTMRFTVACGPQFWPRMFVEGILYGIAKGLLQTIGVAVEGGSYGISESKLGIDIGRIIGMYILPLFIIVRSALGLIVFFTKLIHIYRTRHTSMYENIEDFLQGNSLIPIRYSYKEIKKMTRDFKDKLGEGGYGKVYKGMLRSGPLVAIKMLGKVKGNGNGEDFISEVATIGRIHHTNVVRLIGFCVEGSKRALVYDFMPNGSLDKYISSTEEHIFLTYKQMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDEDFIAKVSDFGLAKLYPVDNSIVTLTGVRGTFGYMAPELFYKNIGKVSYKADVYSFGMLLMEIANRRRNLNTNADDSNQIFFPYWIYNELIEEREIEILGEATDDEKKNVKKMFIIALWCIQLNPNDRPSMDRVIEMLEGEAENIEIPPKPPSPTEIIQDI* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3162 700 SMART serkin_6 404 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3162 700 ProSiteProfiles Protein kinase domain profile. 404 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3162 700 Pfam Protein kinase domain 407 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3162 700 SUPERFAMILY Protein kinase-like (PK-like) 389 678 IPR011009 -
Tpr1g3162 700 Gene3D Phosphorylase Kinase; domain 1 384 480 - -
Tpr1g3162 700 PANTHER RUST RESISTANCE KINASE LR10-RELATED 12 691 IPR045874 GO:0004672
Tpr1g3162 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672|GO:0006468
Tpr1g3162 700 Pfam Wall-associated receptor kinase galacturonan-binding 39 102 IPR025287 GO:0030247
Tpr1g3162 700 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 12 691 - -
Tpr1g3162 700 ProSitePatterns Protein kinases ATP-binding region signature. 410 432 IPR017441 GO:0005524
Tpr1g3162 700 Gene3D Transferase(Phosphotransferase) domain 1 481 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3162 Tpr-Chr1 36090836 36093772 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3162 344 699 Receptor kinase-like Gene Family AT5G38280 45.580 2.90e-99 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3162 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3162 - - mtr:MTR_1g027050 1022.69