Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3160 ATGTGGTGGGTGAAAGTGATATTGGTGGTGTTCTTGCCGTTTTCACATCTACTCCAACAAGGTAGCAGCAGCGGTAGTAGTAGTACTTTTGATCAAGAGCATACATGTCCACCTTCTTCTTGTGGCAAAATTTCCAACATAAGGTATCCATTCCGATTAAAAGATGACCCAAGACACTGCGGAGACAACCGGTATGAGCTATCTTGTGAAAATAATGTAACAACTTTATATTTATACTCTGCAAAATATCATGTCAAGTCCATCAATTACAACAGTTTCACAATCCGGTTAGTCGATCCTGGTATTCAAGAATCTAATTGCTCTTCACTTCCTCTCAATTTCTTGTCACGGTCAAATTTCTGCGATACTTATGAATCGGAGAGGAAATACTGTACGGATCCATACCAAGCAGCAGGATATTATTATGATGATAGCCTTATTTTTGAGCATATAGTATACTTGAATTGTAGCCATCAAGTAACTAACAATCATAAATATGTTGATACTGTTCCGTTCATCAATCCAAACTCAAAAGGGTATTATATTTATGCTATGGCTGGTGATTTAATTGCTCAAGATTTTCAAGTTGGTTGTGATGTGAAATTAGTTACTCCTACATCTGGGCTCCGGAGTTTGAAAAGAAAACTAGTTTCTTATGATGAAATGCACAAGGCGTTAGTGTATGGATTTGAGCTGTCATGGTTAGATCTTCCCTGTCAGAATCATTGCGGAGATTCAGAGTATTGTTCGTTCAACGTTACCACCGAGAAATTTTATTGCTATCGCTTCTGCAATAGTTTCTGGGGGGGAGAACCAGGCAACCGTCTGTGTGCAGGGATATGGTATCAGCTGGGAGTATACGCTAAAGATCTTATCATCGCTATTTGGATAGGATTATTTGAAATGATAAATGGACCAAACCAAAGATACGATGGTGAAACTGAGTATCAAGTAGGATTGGCAACAGGACACTATGTTCTACCATCAGTCTTGGCGGCTAGATTTCTATTTGGGATGACATTATTTATTGCCTTATTGATATACAAATGGAGGAAGAGGCATTTGTCAATGTTTGAATATATTGAAATGTATCTACAACAACAAAATAACCTCATACCAATTGGATATTCATACAAAGAAATTAAGAAAATGGCTAAAGGTTTCAAAGACAAATTGGGTGAAGGAGGTTTTGGAACTGTGTTTAAGGGCAATCTACGTAGTGGACCTTGTGTGGCAATCAAGATGTTGGCTAGTTCGAAAGGTAATGGACAAGATTTTATTAATGAAGTAGCAACCATCGGAAGGATACATCATTTGAATGTGGTGCAGTTAATTGGATTTTGTGCCGAGGGATCAAAACGTGCTCTCGTTTATGATTTCATGCCTAATGGATCTCTCGATAAATATATTTTCTCTAAAGAAGGAAGCCTAAATATAAGCTACAATCAAATTTTTGACATATCGATTGGAGTAGCTCGTGGGATTTCTTATCTCCATCATGGATGTGAAATGAAGATTTTGCATTTTGATATCAAGCCTCACAACATCCTTCTTGACGAGAACTTCACCCCAAAAGTCTCTGACTTTGGACTAGCTAAGTTATATCCTGTACAAAATAGCATTATCACAATGACTGCGGCAAGAGGTACAATTGGATATATGGCTCCAGAGTTGTTCTACAAAAATCTTGGAGGAGTGTCCTATAAGGCGGATGTCTATAGCTTTGGGATGCTTTTGATGGAAATGGCAGGTAGAAGGAAAAACCTTAATCCCCACGCGGAGCATTCTAGCCAACTTTACTTTCCTTTATGGATTTATGATCAAGTTGAAAAAGAGCCTTTGGTGGACATAGAAATGGAAGATACCACGGAGGAGGAAAAGAAAATAGTAAAGAAGATGATCATAGTCGCACTTTGGTGTATACAATTGAAACCAAATGATCGTCCCACAATGAGTAAAGTAGTGGAGATGCTCGAAGGAGACGTTGAAAGCCTTGAAATACCTCCAAAGCCACTCCTTTATCCACAAGAAACAGTTGTAGACGATCAAAGAACTAACTTTGACCAAACAACGTCGAGTGATTACACTAGTTCTTATGATTCTGGGGAAATAGTAAATGCTTCTCTTATAGAGAATATTGATTGA 2145 0.3809 MWWVKVILVVFLPFSHLLQQGSSSGSSSTFDQEHTCPPSSCGKISNIRYPFRLKDDPRHCGDNRYELSCENNVTTLYLYSAKYHVKSINYNSFTIRLVDPGIQESNCSSLPLNFLSRSNFCDTYESERKYCTDPYQAAGYYYDDSLIFEHIVYLNCSHQVTNNHKYVDTVPFINPNSKGYYIYAMAGDLIAQDFQVGCDVKLVTPTSGLRSLKRKLVSYDEMHKALVYGFELSWLDLPCQNHCGDSEYCSFNVTTEKFYCYRFCNSFWGGEPGNRLCAGIWYQLGVYAKDLIIAIWIGLFEMINGPNQRYDGETEYQVGLATGHYVLPSVLAARFLFGMTLFIALLIYKWRKRHLSMFEYIEMYLQQQNNLIPIGYSYKEIKKMAKGFKDKLGEGGFGTVFKGNLRSGPCVAIKMLASSKGNGQDFINEVATIGRIHHLNVVQLIGFCAEGSKRALVYDFMPNGSLDKYIFSKEGSLNISYNQIFDISIGVARGISYLHHGCEMKILHFDIKPHNILLDENFTPKVSDFGLAKLYPVQNSIITMTAARGTIGYMAPELFYKNLGGVSYKADVYSFGMLLMEMAGRRKNLNPHAEHSSQLYFPLWIYDQVEKEPLVDIEMEDTTEEEKKIVKKMIIVALWCIQLKPNDRPTMSKVVEMLEGDVESLEIPPKPLLYPQETVVDDQRTNFDQTTSSDYTSSYDSGEIVNASLIENID* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3160 714 SMART serkin_6 386 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3160 714 ProSitePatterns Protein kinases ATP-binding region signature. 392 414 IPR017441 GO:0005524
Tpr1g3160 714 Gene3D Phosphorylase Kinase; domain 1 364 460 - -
Tpr1g3160 714 SUPERFAMILY Protein kinase-like (PK-like) 366 659 IPR011009 -
Tpr1g3160 714 Pfam Protein kinase domain 389 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3160 714 Pfam Wall-associated receptor kinase galacturonan-binding 36 99 IPR025287 GO:0030247
Tpr1g3160 714 Gene3D Transferase(Phosphotransferase) domain 1 461 666 - -
Tpr1g3160 714 PANTHER RUST RESISTANCE KINASE LR10-RELATED 32 688 IPR045874 GO:0004672
Tpr1g3160 714 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 32 688 - -
Tpr1g3160 714 ProSiteProfiles Protein kinase domain profile. 386 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3160 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 506 518 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3160 Tpr-Chr1 36069055 36078298 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3160 32 674 Receptor kinase-like Gene Family AT5G38260 35.890 5.35e-118 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3160 Pkinase 6.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3160 - - gmx:100305367 882.093