Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3158 ATGTGGTGGGTCAGAGTGATATTGGTGCAACTTCTGCCGTTTACCTGCCGTGCTAGTACCGATCAACAGCATTCTTGTCCAGCTTCATCTTGTGGCAAAATTTCTAACATAAGTTACCCATTTCGATTAAAAGATGACCCAATTCATTGCGGCGATAGAAGGTATGAACTATCATGTGAAAATAATGTGACAACTTTATATTTATACTCTTCAAAATATCATGTCAAGTCCATCAACTACAACAATTTCACAATCCGATTGGTTGATTCTGGAATTCAACAAGATAATTGTTCTTCACTTCCACTCAATTCCCTATCTCAATCCAATTTCTGTGTTAGATACAATTATTTGGACAAATATTGCACGGATCCATACCAACCCGTGCTTGATAATATCCTTCTTTTTGAGTATATAGTATATTTGAATTGTAGCCATCAAGTTACTAACAATCATAAATATGTTGATACTGTTCCATGCTTCGATTGGAACTCGAAATCCAAAGGATATTATATTTATGCTATGGCTGGTGATTTAATTGCTGAAGATTTTCAAGTTGGTTGTCACGTTGAATTAGTGGCTCCTACATCTTGGTTGGGAAATTTGCAAGCAATTGAAATAGTTTCTTATGATCAAATGCACAAGGTGTTAGTATATGGATTTGAGATTACATGGTTTCTTCATATGTGTCAAACACGTTGTGGAGATACACGCTTCTGTTCATTCAACACTACCACCCAGAAACTTGAATGCAATCGCTTATGCCGCAGTTCCTTATTCGGAGGTTGGAGTAATCGTTGTGGATGGTCCGAGTTGAGTTTATACGCTAAAGATACTATCATAGCTGTCTGGATAGGATTATTTGAAATGATAAAAGGACCAAACCAAATATACGATGGTGAAACTGTGTATCAAGTAGGATTGGCAACTGGACACTATGTTCTACCATCATTCTTGGCAGCTAGATTTCTATTTGGGATGACATTATTTATTGCCTTCTTGATATACAAATGGAGGAAGAGGCATTTGTCAATGTTTGAATATATTGAAATGTATCTACAACAACAAAATAACCTCATACCAATTGGATATTCATACAAAGAAATTAAGAAAATGGCTAAAGGTTTCAAAGACAAATTGGGTGAAGGAGGTTTTGGAACTGTGTTTAAAGGCAATCTACGTAGTGGACCTTGTGTGGCAATCAAGATGTTGGCTAGTTCGAAAGGTAATGGACAAGATTTTATTAGTGAAGTAGCAACCATCGGAAGGATACATCATTTGAATGTGGTGCAGTTAATTGGATTTTGTGCCGAGGGATCAAAACGTGCTCTCGTTTATGATTTCATGCCTAATGGATCTCTCGATAAATATATTTTCTCTAAAGAAGGGAGCGTAAATATAAGCTACAATCAAATTTTTGACATATCGATTGGAGTAGCTCGTGGGATTTCTTATCTCCATCATGGATGTGAAATGAAGATTTTGCATTTTGATATCAAGCCTCACAACATCCTTCTTGACGAGAACTTCACCCCAAAAGTCTCTGACTTTGGACTAGCTAAGTTATATCCTGTACAGAATAGCATTATTACAATGACTGCAGCAAGAGGTACAATTGGATATATGGCTCCAGAGTTGTTCTACAAAAATCTTGGAGGAGTATCCTATAAGGCTGATGTTTATAGCTTTGGTATGCTTTTGATGGAGATGGCAGGTAGAAGGAAAAACCTTAATCCCCATGCAGAGCATTCAAGCCAACTTTACTTTCCTTTATGGATTTATGATCAAGTTGAAAAAGTGGGAGACATAGAAATGGAAGATACCACCGAGGAGGAAAAGAAAATAGTAAAGAAGATGATCATAGTCGCACTTTGGTGTATACAATTAAAACCAAATGATCGTCCCACAATGAGTAAAGTAGTGGAAATGCTCGAAGGTGACGTTGAAAGCCTTGAAATACCTCCAAAGCCACTACTTTATCCACAAGAAACAGTTGTAGACGATCAAAGAACTACCTTTGACCAAACAACGTCGAGTGATTACACTAGTTCTTATGATTCTGGGGAAATAGTAAATGCTTCTCTTATAGAGAATATTGATTGA 2100 0.3681 MWWVRVILVQLLPFTCRASTDQQHSCPASSCGKISNISYPFRLKDDPIHCGDRRYELSCENNVTTLYLYSSKYHVKSINYNNFTIRLVDSGIQQDNCSSLPLNSLSQSNFCVRYNYLDKYCTDPYQPVLDNILLFEYIVYLNCSHQVTNNHKYVDTVPCFDWNSKSKGYYIYAMAGDLIAEDFQVGCHVELVAPTSWLGNLQAIEIVSYDQMHKVLVYGFEITWFLHMCQTRCGDTRFCSFNTTTQKLECNRLCRSSLFGGWSNRCGWSELSLYAKDTIIAVWIGLFEMIKGPNQIYDGETVYQVGLATGHYVLPSFLAARFLFGMTLFIAFLIYKWRKRHLSMFEYIEMYLQQQNNLIPIGYSYKEIKKMAKGFKDKLGEGGFGTVFKGNLRSGPCVAIKMLASSKGNGQDFISEVATIGRIHHLNVVQLIGFCAEGSKRALVYDFMPNGSLDKYIFSKEGSVNISYNQIFDISIGVARGISYLHHGCEMKILHFDIKPHNILLDENFTPKVSDFGLAKLYPVQNSIITMTAARGTIGYMAPELFYKNLGGVSYKADVYSFGMLLMEMAGRRKNLNPHAEHSSQLYFPLWIYDQVEKVGDIEMEDTTEEEKKIVKKMIIVALWCIQLKPNDRPTMSKVVEMLEGDVESLEIPPKPLLYPQETVVDDQRTTFDQTTSSDYTSSYDSGEIVNASLIENID* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3158 699 SMART serkin_6 373 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3158 699 Pfam Wall-associated receptor kinase galacturonan-binding 26 89 IPR025287 GO:0030247
Tpr1g3158 699 Pfam Protein kinase domain 376 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3158 699 Gene3D Phosphorylase Kinase; domain 1 351 447 - -
Tpr1g3158 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
Tpr1g3158 699 ProSitePatterns Protein kinases ATP-binding region signature. 379 401 IPR017441 GO:0005524
Tpr1g3158 699 Gene3D Transferase(Phosphotransferase) domain 1 448 651 - -
Tpr1g3158 699 CDD STKc_IRAK 379 645 - -
Tpr1g3158 699 ProSiteProfiles Protein kinase domain profile. 373 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3158 699 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 4 673 - -
Tpr1g3158 699 SUPERFAMILY Protein kinase-like (PK-like) 353 644 IPR011009 -
Tpr1g3158 699 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 673 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3158 Tpr-Chr1 36058746 36063275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3158 15 659 Receptor kinase-like Gene Family AT5G38260 35.098 5.69e-118 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3158 Pkinase 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3158 - - gmx:100305367 864.374