Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3153 ATGTGCAGAGAAAAATCATTATTATGCTTCCTCCAAATTATAGTTGTTGTGTTACTACTGCATCATAATAATCATCAAACATGCGATGCAACAAATACTAATAACCAAACATATTGTCCACCTTCTTCATGCGGCAAAATCACAAACATACAACACCCCTTTCGACTTACCGATGATCCAACAACCTGCGGTGATCCGAGGTACGAGTTATCCTGCGAAAACAATATGACAGTGTTAACTCTTTTTTCGGGTAAATACTATGTGAAATCAATCAACTACAAAAACTACACAATTCGGCTATTAGATCCCGGAATTGAAGAGGGTGATTGCTCCTCTATTCCTCGATATTACTTATACACTTCAAATTTCACAAGTTATAGCAACGACGACGAAGATCCATATCAAACCTCCCAAAACAGAATAATTTCTGGAGAAGATACTTATGGTGATACTATAACCTTACCAATGTTCCAGCACGTAATTTACATGAATTGTAGTAATCCTGTACGAGATGATACGGTGTTCGTGGATACAGCTTCTTGCATCAAGTCCAATTCCCAAGGTGGCCATGTTTATGCCATTTCTGGGGATTTGAAGGTTGGTAACTTAAACGACGATGACTGCCACGTGGAGGTTGTTACCACGATATCATTTTCCGGCTATCATTACAGTCCTTACAGGTCTGTTTATTGGGACATTCTGAAAAAAAAGTATTCGTACAGTGAAATTCATAGGATGTTGGTGGGTGGATTTGAGGTTTCTTGGATGAGTGCTCCTTGTCAAGATCTTTGTGGAAAACCAGTTTGCTATTTGAGAGAAACCACTTGGAGTCTTGAATGCTTTGATCCTGCTGGTTATTGTGAAACAACATTGGGATTTCATGTCAGTTGCGGTGGAACTCTATCAAAGCTGCGAGTGTTTGTTGAAGGTATTTTGTACGGCATTGTTGCAGGACTAATACATCCAGTTGGCTTGACAGTAAATAATGGATCTTTTAATACGCCTCAATCAAAATTTGGTATCGTTATAGGAACAATCATTGGACATATTCTGTTTCCATTCATTATAGTGAGATCTACGTTGGGTCTCATAGTTTTCTTTGCAAAATTGATACATACATATCGATTAAGGCATACATCAATCTATGAAAACATCGAAGATTTTCTTCAAGGCAACTCCCTCATGCCAATAAGGTATTCATACAGAGAGATAAAGAACATGACAAGAGGTTTTAAGGACAAGTTGGGTGAAGGAGGCTATGGTAAGGTTTATAAGGGACAGCTACGTAGTGGCCCTTTGGTAGCCATAAAGATGTTGGGTAAACCTAAGGGTAACCAAAATGGACAAGATTTCATTAATGAAGTTGCAACCATAGGAAGAATACATCACACCAATGTGGTGCGACTTATTGGATTTTGTGTTGAGGGTTCAAAGCGTGCTATTGTTTATGATTTCATGCCCAATAGCTCTCTTGATAAATACATTTCCTCTAAAGAAGATCATATCTTCTTGACTTATAAGCAAATGTACGAGATATCTCTTGCAGTGGCGCGTGGAATTGCTTATTTGCATCAAGGTTGTGACATGCAAATTTTACATTTTGATATCAAACCCCATAACATACTTCTTGACAAGGATTTCATCGCCAAAGTTTCAGACTTTGGTCTTGCAAGACTTTATCCAGTTGAAAATAGCATTGTAACTTTGACTGCTGCTAGAGGAACAATTGGTTACATGGCTCCAGAATTGTTCTACAAAAATATTGGTGGAGTTTCCTATAAGGCTGATGTATATAGCTTTGGAATGCTCTTAATGGAAATAGCAAATAGAAGAAGAAATTTGAACTCAAATGCAGATGATTCAATGCAAATTTTCTTTCCCTATTGGATTTACAATGAATTGATTGAAGAAAGAGAGATAGAAATGTTGGGAGAAGCTACCGATGAGGATAAGAAAAATGTGAAGAAAATGTTCATAGTTGCCCTATGGTGTATACAATTGAAACCCAATGATCGCCCTTCAATGGACAAAGTAATAGAAATGCTTGAAGGAGATATTAAAGACATTAAAATTCCTCCAAAACCTTCTCCATATCCAACTGAAATTATTCAAGATCATGTAACTAGCTCTAGTGAATCTATATCGGATGATGTTGTCACTGGATCAATTAGTTTTCTTGAGGAAACTATGGAAGATCCTTTATTATAG 2208 0.3718 MCREKSLLCFLQIIVVVLLLHHNNHQTCDATNTNNQTYCPPSSCGKITNIQHPFRLTDDPTTCGDPRYELSCENNMTVLTLFSGKYYVKSINYKNYTIRLLDPGIEEGDCSSIPRYYLYTSNFTSYSNDDEDPYQTSQNRIISGEDTYGDTITLPMFQHVIYMNCSNPVRDDTVFVDTASCIKSNSQGGHVYAISGDLKVGNLNDDDCHVEVVTTISFSGYHYSPYRSVYWDILKKKYSYSEIHRMLVGGFEVSWMSAPCQDLCGKPVCYLRETTWSLECFDPAGYCETTLGFHVSCGGTLSKLRVFVEGILYGIVAGLIHPVGLTVNNGSFNTPQSKFGIVIGTIIGHILFPFIIVRSTLGLIVFFAKLIHTYRLRHTSIYENIEDFLQGNSLMPIRYSYREIKNMTRGFKDKLGEGGYGKVYKGQLRSGPLVAIKMLGKPKGNQNGQDFINEVATIGRIHHTNVVRLIGFCVEGSKRAIVYDFMPNSSLDKYISSKEDHIFLTYKQMYEISLAVARGIAYLHQGCDMQILHFDIKPHNILLDKDFIAKVSDFGLARLYPVENSIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEIANRRRNLNSNADDSMQIFFPYWIYNELIEEREIEMLGEATDEDKKNVKKMFIVALWCIQLKPNDRPSMDKVIEMLEGDIKDIKIPPKPSPYPTEIIQDHVTSSSESISDDVVTGSISFLEETMEDPLL* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3153 735 ProSitePatterns Protein kinases ATP-binding region signature. 415 437 IPR017441 GO:0005524
Tpr1g3153 735 ProSiteProfiles Protein kinase domain profile. 409 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3153 735 Pfam Protein kinase domain 412 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3153 735 Gene3D Transferase(Phosphotransferase) domain 1 486 691 - -
Tpr1g3153 735 PANTHER RUST RESISTANCE KINASE LR10-RELATED 13 708 IPR045874 GO:0004672
Tpr1g3153 735 Pfam Wall-associated receptor kinase galacturonan-binding 39 102 IPR025287 GO:0030247
Tpr1g3153 735 SUPERFAMILY Protein kinase-like (PK-like) 394 683 IPR011009 -
Tpr1g3153 735 SMART serkin_6 409 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3153 735 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 13 708 - -
Tpr1g3153 735 Gene3D Phosphorylase Kinase; domain 1 386 485 - -
Tpr1g3153 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3153 Tpr-Chr1 36037877 36041315 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3153 27 724 Receptor kinase-like Gene Family AT5G38260 33.566 4.78e-105 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3153 Pkinase 9.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3153 - - mtr:MTR_1g027050 1103.58