Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3148 ATGACAAGAGCACATAGCACTTTGATTAAGCTACTTATTCTTCTTAATCTCCTGCATATAAATAGCAGCAGCGATCATGACCAGTGTACAACAGAATCATCATTTTGTGGACCTTACGAACCAATTGTTCAATTTCCCTTCCAACTCGTTAAGGACGAACCATCACAAGATCAATGTCTTTATCCTGAGTTTTGCCTATATTGTACTCCAAATAACAAAACCATGATTTTGCTCTCTACCAATTTAGGTCCAATCAAATTCCTTGTTACTCAAATTGATTACGAACCACAGAATATTATTTACATTTCTGATCCGGACAATTGCTTTCCAAAAATGTTTCTCGAACTGAAACTTAACCGTTCATCCTTTCTACCTTATTACCGATTTTATGCAGAATCGAAAACAACATTATCCTTTTTCAATTGCTCTTCAGTTAAGAAACCACACCTGAGAAACACGGATCAGATATTTGGTGAGTCACAAAATATGATCACTTGTCCAATTTACGCTACTGATTCCGAGGACAGTGTACTCACAATGGACCTTGTATCGTGTACCAAGATGTTTGAAGTCAATGCTACTATAAATGCAAATCGCCTGTCGATGAATTTCCTCATGTTGAGTTGGCCAAAACCAAATTGTGCCATTTGTGAAGCAAAAGGCATGAAATGTAGATGGAACAAGAACAGCACCAAAGGTGACATTGAATGCTATGACTGCAACGACAAACGCAAAACTATCCATATTCCAAAATCTCTCATTTTCTCTGCTATAGGTTCGATTATATTGGGGTTGGTCATCATTGCAATTACTAAGATTTATCTACATTTCAAGGGAAAAAAAGAAGATCAAGTTAGAATTGACAAGTTTTTAGAGGATTATAAAGCACAAAAGCCTGCCAGATTTTCTTATGCTGATATAAAAAGAATCACGGATGGGTTTAAGGAAAAGCTAGGAGAAGGAGCTCATGGAACAGTGTTTAAAGGAAAACTCTCTAGTGAGATTCTAGTGGCTGTGAAGGTGCTCAATAATACACAAGGTGATGGGAAAGAGTTCATCACTGAAGTGGAAATTATGGGCAAAATCCACCACATCAATGTTGTTCGTTTGCTTGGCTTTTGCGCAGACGGAATCCACCGGGCTCTTGTATACAATTTGTTTCCAAAAGGTTCGCTACAAAGCTTCATATTTCCACCGGATAACAAGGACCATTTTATGGGGTGGGAAAAGCTGCAACAAATTAATCTTGGTATAGCAAAAGGAATCGAGTATCTTCATGAGGGTTGTAGTCATCCAATCCTTCACTTTGACATCAATCCTCACAATGTTTTGCTAGATGACACCTTCACACCAAAAATTTCAGATTTTGGTCTCGCCAAATTATGTGCCAAGAATGTTAGTATGGTGTCCATGACAGCTGCTAGGGGAACGATGGGATATATCGCGCCTGAAGTACTATCCCGAAATTTTGGAAATGTTTCTCTTAAATCTGATATTTATAGTTATGGTATGTTGTTGCTTGAAATGGTCGGAGGAAGGAAGAATGTAGACTCGTCATCTGCAGAAACAACTCATGTTTTATATCCAGAATGGATCCATAATTTATTGGAAGGAGACATACATATACATATTGATGATGAAGGTGAAGTTAAAATTGCCAAGAAACTCGCAATTGTTGGACTTTGGTGTATTCAATGGCAGCCAATGAATCGTCCTTCCATCAAAACGGTCATACAAATGTTGGAAACAGGAGATGATAACCGGTTAAGCATTCCACCTAATCCTTTTCACTCAACCACTTCCACAGCCACTAGTGAAGGCTCTTTGGCAAGAAGACCTTTCCAAATGGAAGTGATTAAGGAATAA 1866 0.3816 MTRAHSTLIKLLILLNLLHINSSSDHDQCTTESSFCGPYEPIVQFPFQLVKDEPSQDQCLYPEFCLYCTPNNKTMILLSTNLGPIKFLVTQIDYEPQNIIYISDPDNCFPKMFLELKLNRSSFLPYYRFYAESKTTLSFFNCSSVKKPHLRNTDQIFGESQNMITCPIYATDSEDSVLTMDLVSCTKMFEVNATINANRLSMNFLMLSWPKPNCAICEAKGMKCRWNKNSTKGDIECYDCNDKRKTIHIPKSLIFSAIGSIILGLVIIAITKIYLHFKGKKEDQVRIDKFLEDYKAQKPARFSYADIKRITDGFKEKLGEGAHGTVFKGKLSSEILVAVKVLNNTQGDGKEFITEVEIMGKIHHINVVRLLGFCADGIHRALVYNLFPKGSLQSFIFPPDNKDHFMGWEKLQQINLGIAKGIEYLHEGCSHPILHFDINPHNVLLDDTFTPKISDFGLAKLCAKNVSMVSMTAARGTMGYIAPEVLSRNFGNVSLKSDIYSYGMLLLEMVGGRKNVDSSSAETTHVLYPEWIHNLLEGDIHIHIDDEGEVKIAKKLAIVGLWCIQWQPMNRPSIKTVIQMLETGDDNRLSIPPNPFHSTTSTATSEGSLARRPFQMEVIKE* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3148 621 Gene3D Transferase(Phosphotransferase) domain 1 387 591 - -
Tpr1g3148 621 ProSiteProfiles Protein kinase domain profile. 312 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3148 621 PANTHER RUST RESISTANCE KINASE LR10-RELATED 19 621 IPR045874 GO:0004672
Tpr1g3148 621 Gene3D Phosphorylase Kinase; domain 1 286 386 - -
Tpr1g3148 621 SUPERFAMILY Protein kinase-like (PK-like) 296 582 IPR011009 -
Tpr1g3148 621 Pfam Protein kinase domain 315 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3148 621 PANTHER RECEPTOR-LIKE KINASE 19 621 - -
Tpr1g3148 621 Pfam Wall-associated receptor kinase galacturonan-binding 29 103 IPR025287 GO:0030247
Tpr1g3148 621 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3148 Tpr-Chr1 35988680 35991100 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3148 14 608 Receptor kinase-like Gene Family AT1G66910 33.230 1.40e-94 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3148 Pkinase 4.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3148 - - gmx:100811907 827.78