Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3144 ATGATGAAAAAACAAGCTCAATTTTCTTGTTCATCATATTTACAAACACTAGTATCAATATTTACTACAACTCTTCTCCTTTTCCATCAAAATTCTCTAGCTAAACATCACCAACCATGTCCAACTTCATCATGTGGCAGAATTCACAACATAACATATCCATTTCGTCTCAAAACCGATCCAAACCAGTGTGGCGACTCAAGGTACGAATTAGATTGCAACGAATTCGGTGCATCATTAACTATGTTCTCGGGGAAATACTACGTACAACACATCGATTACAAGAGATATACAATTTCATTAAGCGACGCCGGTGCAGTGGAAGATACTAATTGCTCTTCCATACCACGGTACTTTCTATACGACCGTAGTTTCCATAATATTCTTTATGGTGAACAGGATTTTGGATCTGAACCGTTCCTTTTGGATCTAAGTCCACCAAGAGTCGCATATTTCAATTGTTCTAATCCAGTTAAAGATCCACGGTATGTTACCGTGGACACAAGTCATTGTAGCATACGAGGAATTGGTCATGTGTATGCTGTTTTGGAACAATCATTGTCTGAGTATAGTTTTGAGGATATTAAGATTGGGTGTGAGTTTATGGTGGCTACGTTGACTAAGGAATGGTTTGAGGACATTAGGAAGGGGAATGTTTCTTATGATGAGATTCATGGGTTGATTGTCGATGGATTTGAGGTTTCTTGGTTACCCGCGGTTTGTGAAAGTCGATGTGGTAAAGGGACAATTTGTGAGGTTGTTGATGAAAAAAGTGGACAAGTTAAATGTGGGAAGCGATTCTGTCATTATGCTTACCAAACAACCAATAAGTGTGAACTTCAACAGCAGATATTTGGTTATATCCGCGCTTATCTTAGAGGCATTTTTATTGGACTTGGAAGTAGAATCACATTTAGCACAAGACAATTGGACAATCCAGTTGGACTAGAATATTTTGATGGAGGAATATTCATAGGAAGAAAAGTTATACCGATATTCGTAGCAGCTAGATTTATATTTGGAGTTACAGTTCTACTTGTGCTATTTATCTATAAATGGAGAAGAAGACATGTATCAATGTATGATAACATTGAAAACTTTTTGCTTGAGAGCAATCTAAATCCAATTAGGTATGAGTACAAAGAAATCAAGAAGATGACCGGAGGTTTCAGAGTGAAATTAGGTCAAGGTGGTTTCGGTGCTGTGTACAAAGGAAAGCTAAGAAGTGGACCGGATGTCGCAATAAAGATGTTGACAAAAACAAATGTTAATAATGGACAAGATTTTATTAATGAAGTTGCGACCATTGGAAGAATACATCATGTTAATGTAGTTCGTTTGGTTGGATATTGTGTTGAAGGAAAAAAGAGTGCGTTGGTTTATGAATTCATGCCGAATGGATCGTTGGATAAATACATTTTCCCTAAAGAAGGAGTTGTCCCTTTGAGTTATGAGAAAGTATATGAAATATCTCTTGGAATAGCTCGTGGGATATCGTATCTACATCAAGGTTGTGATATGCAAATTCTTCATTTTGATATCAAACCTCATAATATCCTTCTAGATGAAGATTTTGTTCCGAAGGTTTCGGATTTTGGACTTGCAAAGCTATATCCTGTGAACGATAGCATTGTTCCGTTAACTGCGGCCAGAGGAACTTTGGGTTACATGGCTCCTGAATTGTTCTATAAAAATATCGGAGGAGTTTCTTACAAGGCTGATGTATATAGTTTTGGAATGCTTTTGATGGAAATGGCAGGTAAAAGGAAGAACATGAATCCTAACGCAGAGCATTCGAGTCAACATTACTTCCCATTTTGGATTTATGATCAATTTAAAGAAGAGAAAGATATCGAAATAATGGAAGATGTCTCAGAAGAGGGAATGACTATAGCTAAAAAGATGTTCATGGTTGCGCTTTGGTGTATTCAGTTGAAACCGAGTGGTCGTCCTTCAATGAACAAAGTAGTAGAGATGCTTGAAGGGAAAACGGAAAGCACTGAACTACCTCCAAGGCCTTCTTTTTATCCAAATGAAAATTATAAACATCATGAAGAAATCGACTCTGATCAATCATCATGGGGTGATTCCACTAGTATTGGTCAAGCCTCGACTAATTATTCACTGGACAGTTCCTCTTGA 2142 0.3735 MMKKQAQFSCSSYLQTLVSIFTTTLLLFHQNSLAKHHQPCPTSSCGRIHNITYPFRLKTDPNQCGDSRYELDCNEFGASLTMFSGKYYVQHIDYKRYTISLSDAGAVEDTNCSSIPRYFLYDRSFHNILYGEQDFGSEPFLLDLSPPRVAYFNCSNPVKDPRYVTVDTSHCSIRGIGHVYAVLEQSLSEYSFEDIKIGCEFMVATLTKEWFEDIRKGNVSYDEIHGLIVDGFEVSWLPAVCESRCGKGTICEVVDEKSGQVKCGKRFCHYAYQTTNKCELQQQIFGYIRAYLRGIFIGLGSRITFSTRQLDNPVGLEYFDGGIFIGRKVIPIFVAARFIFGVTVLLVLFIYKWRRRHVSMYDNIENFLLESNLNPIRYEYKEIKKMTGGFRVKLGQGGFGAVYKGKLRSGPDVAIKMLTKTNVNNGQDFINEVATIGRIHHVNVVRLVGYCVEGKKSALVYEFMPNGSLDKYIFPKEGVVPLSYEKVYEISLGIARGISYLHQGCDMQILHFDIKPHNILLDEDFVPKVSDFGLAKLYPVNDSIVPLTAARGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMAGKRKNMNPNAEHSSQHYFPFWIYDQFKEEKDIEIMEDVSEEGMTIAKKMFMVALWCIQLKPSGRPSMNKVVEMLEGKTESTELPPRPSFYPNENYKHHEEIDSDQSSWGDSTSIGQASTNYSLDSSS* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3144 713 CDD STKc_IRAK 394 662 - -
Tpr1g3144 713 Pfam Protein kinase domain 393 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3144 713 SMART serkin_6 388 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3144 713 MobiDBLite consensus disorder prediction 692 713 - -
Tpr1g3144 713 Pfam Wall-associated receptor kinase galacturonan-binding 40 103 IPR025287 GO:0030247
Tpr1g3144 713 Gene3D Phosphorylase Kinase; domain 1 365 463 - -
Tpr1g3144 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 509 521 IPR008271 GO:0004672|GO:0006468
Tpr1g3144 713 ProSitePatterns Protein kinases ATP-binding region signature. 394 416 IPR017441 GO:0005524
Tpr1g3144 713 SUPERFAMILY Protein kinase-like (PK-like) 378 689 IPR011009 -
Tpr1g3144 713 ProSiteProfiles Protein kinase domain profile. 388 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3144 713 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 2 693 - -
Tpr1g3144 713 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 693 IPR045874 GO:0004672
Tpr1g3144 713 Gene3D Transferase(Phosphotransferase) domain 1 464 670 - -
Tpr1g3144 713 MobiDBLite consensus disorder prediction 661 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3144 Tpr-Chr1 35944877 35948120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3144 32 676 Receptor kinase-like Gene Family AT5G38260 35.294 1.11e-104 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3144 Pkinase 7.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3144 - - lja:Lj0g3v0275229.4 1007.67