Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3143 ATGATAAAAATGATATTTATTTCCAACTTCAAACTATATCAACATCCTAAACCTGCAAAATCATCCAAAAAAATGGCCAATTTTCACAATTTCCCCTTTCTACTAACTCTATTCTTTCTCCTATTAACAAAACCAGTAACATCCAAAAATCATTGCACTGAAAAATGTGGAAAAGTTCAAATTCAATTTCCATTTCATCTCAAAAACAACAACATGAATCAAACCAATCCTAAAGGTTTTGAATTATCATGTACAGATAAAGATGAAACTGTTCTAGAATTTCCCAAACTTTCACTCAAGCTTTTCATCAAACAGATAGACTACAAATCACAAAAATTCCAAATCTATGATCCAAAGAATTGTCTTGCAAGTCAATTATTAAAACTAGGAAATTCATCAGTTTCACCTTTTCTGTTACACTTCCATGAGTTTAATATACAGCGTAACGTTTCGTTCTTTCGTTGCAATTCGAATAACGGGTGTTCGATATTGCAACGTGATTCTGATGGTGATTTTATTGATCCTGAATTGGTTTCTTGTAGAAAAGTGAGTGATGTTTTGAATGTTGGTTGGATGGTTGAAGAATGGGAAGATGATATTACTGAGAGTTTGATTATGGAATGGTCTAAACCTAATTATAGTTTTTGTGCAGTTCAAGGGCAAAAATGTAAATGGAAGAATGGTGGTAAAAATGGTGAAGTTGAATGTTATGTTTGTAAATCGGATGGAATTGCAAGATCTACTGTTCTTCTCATTACTGCTGGGGCTATAGTTGGATCAATGGTTTTGCTGCTATTGACAAATGGACTACTTCAAATTTATCGCTATTTTAAGATGAAAGGGGATGACATAGCAAGGATAGAGAAGTTCTTAGAGGATTATAGGGCAATGAAACCTACAAGATTCACTTATGCTGATATTAAGAGAATAACAAATGGTTTTAAGGAGAGTTTAGGAGAAGGAGCACATGGAGCTGTGTTCAAAGGCATGCTCTCCCAAGAAATTCTGGTAGCTGTGAAGGTACTCAATGAAACACAAGGAGATGGAAACGATTTCATTAATGAAGTCGGAACCATGGGAAAAATTCATCATGTCAATGTCGTTCGTTTGCTTGGATTCTGCGCTGATGGATTCCACCGTGCTCTTGTCTATGATTTGTTTCCAAATGGGCCGTTGCAGAATTTCTTGGCACCACCGGAGAACAAGGATGTTTTTCTTGGTTGGGAAAAGTTGCAACAAATTGCTATCGGTGTTGCAAAAGGGATTGAGTATCTTCATGTTGGTTGTGATCATAGAATACTTCACTTTGATATTAATCCACACAATGTGTTAATAGATGATAATTTGAGTCCTAAAATTACTGACTTCGGACTTGCTAAATTGTGTCCGAAAAATCAAAGCACGGTTTCTATGACTGCAGCTAGAGGAACATTAGGATACATTGCACCAGAAGTTTTCTCGAGAAACTTTGGAAATGTATCTTATAAATCTGATATTTATAGCTACGGAATGTTGTTGCTCGAGATGGTTGGAGGAAGAAAGAATACTGATGTGTCAGCTGAGGAAACATTCGAAGTTTTGTATCCGGAATGGATTCATAATCTGATTGAAGGTAAAGACGTACAAGTTAATATTGAGGAAGCGGGAGATGTTAGAATTGCAAAAAAGCTCGCCCTTGTGGGACTTTGGTGTATCCAATGGAATCCGGTGGATCGTCCATCGATGAAAACTGTGGTTCAAATGCTTGAAGGTGAGGGAGAAAAATTACTGGCACCCCCTACTCCTTTTGACTCTATTGGTGCTAATGGAACAAATGCAGTTGTTCCATCTAGACATCTGAATTTTGAGTTAGAAGTTATACCTGAAATTGAGTAA 1875 0.3632 MIKMIFISNFKLYQHPKPAKSSKKMANFHNFPFLLTLFFLLLTKPVTSKNHCTEKCGKVQIQFPFHLKNNNMNQTNPKGFELSCTDKDETVLEFPKLSLKLFIKQIDYKSQKFQIYDPKNCLASQLLKLGNSSVSPFLLHFHEFNIQRNVSFFRCNSNNGCSILQRDSDGDFIDPELVSCRKVSDVLNVGWMVEEWEDDITESLIMEWSKPNYSFCAVQGQKCKWKNGGKNGEVECYVCKSDGIARSTVLLITAGAIVGSMVLLLLTNGLLQIYRYFKMKGDDIARIEKFLEDYRAMKPTRFTYADIKRITNGFKESLGEGAHGAVFKGMLSQEILVAVKVLNETQGDGNDFINEVGTMGKIHHVNVVRLLGFCADGFHRALVYDLFPNGPLQNFLAPPENKDVFLGWEKLQQIAIGVAKGIEYLHVGCDHRILHFDINPHNVLIDDNLSPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTDVSAEETFEVLYPEWIHNLIEGKDVQVNIEEAGDVRIAKKLALVGLWCIQWNPVDRPSMKTVVQMLEGEGEKLLAPPTPFDSIGANGTNAVVPSRHLNFELEVIPEIE* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3143 624 PANTHER RUST RESISTANCE KINASE LR10-RELATED 66 624 IPR045874 GO:0004672
Tpr1g3143 624 Pfam Wall-associated receptor kinase galacturonan-binding 52 117 IPR025287 GO:0030247
Tpr1g3143 624 ProSiteProfiles Protein kinase domain profile. 312 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3143 624 Pfam Protein kinase domain 315 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3143 624 Gene3D Transferase(Phosphotransferase) domain 1 387 589 - -
Tpr1g3143 624 Gene3D Phosphorylase Kinase; domain 1 287 386 - -
Tpr1g3143 624 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 66 624 - -
Tpr1g3143 624 SUPERFAMILY Protein kinase-like (PK-like) 294 583 IPR011009 -
Tpr1g3143 624 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3143 Tpr-Chr1 35940676 35944376 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3143 256 595 Receptor kinase-like Gene Family AT1G66910 46.439 1.93e-101 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3143 Pkinase 4.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3143 - - gmx:100819302 869.766