Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3140 ATGAGCAGAAGAAAATCCTTCTCCTGTTCTGCGGAATCAATATCACTTTTATGGTTCCTCCAAATTGTTATGGTTGTTATAGTGATACTACAACACCATCATCATCAAACATGTGATGCAAGTACTATTACTATTACTAATAACCAAACATATTGTCCACCTTCTTCATGCGGCAAAATCACAAACATAAAACCTCCCTTTCGACTTAAGAATGATCCAACAACCTGCGGTGATCCGAGATACGAGTTAGCCTGCGAAAACAACATGACAATGTTAACTCTGTTTTCCGGTAAATACTATGTTAAATCAATCGACTACGAAGACTACACAATTCAGTTAGTTGATCCTGGAATTGCAGAAGGTGATTGCTCTTCCATTCCTCGCTATTTCTTAACCGAATCCAACTTCACATACAATTATCCCATTGATAGCAACCGCGTGGATCCATATGAAATTAGTTATTATTCTGGGTACGGTCGCGGGCACATAATATACTTGAAGTGTAGCAAACCAGTGAAGAACGATCCTAAGTATGTGGATACATCTCCGTGTGGAGTTAACTCAGACTCCAAAAGCTATGTTTATGCTGCGATGGGGTACTTGAAAGTTGAGAGTTTAAGAGATTATTGCAAAGTGAAGCTTGTTGCTATGACATATTCAGCTGATAACCCAAATCGATCCCTTTCATACAAGGAAATTTATGGAATGCTACAAAATGGTTTTGAGCTATCGTGGTTCAGTGGTGCTTGTAAACAATTATGCGGAGATAATCAAATATGCGAGTATCCCAACTCAAATCTTAAATGTCAATCAAACATTTGCAGTTATCCAATGGGAGCTGATGGGAATTGCGACCAAATGTCAAAGCTGCGCATATTAGCAGAAGATATTATACTAGGCATCATTAAAGGAGCACTGCAAGTAATTGGCATAACAAAAACCTATACTTTATACAAAGTAATTGGCAACACAAAAACCGATGCATCATCCAAAGAAGATGTTTCTATTTCAAAAATTGGCATCGAAATAGGAAGAATCACAGGCAAATATATCTTGCCATCATATATAGTGAGATTTGTAATGGGCCTTATAGTTTTCTTTGTACTACTGATAAATACATGTCGGAGAAGACATATATCAATATACGAGAGTATTGAAGTTTTTCTTCGAGCAAATACCTTGATACCAATTAGATATTCATACAAAGAAATAAAGATGATGACTGGAAGTTTTAGAGCCAAGTTGGGTGAAGGAGGTTTTGGAGCCGTTTTTAAAGGAAAGCTACGCAGTGGGCCATTTGTGGCAGTAAAGGTGTTGGGTAAATCTAAGGGCAATGGACAAGATTTCATTAATGAAGTTGCAACTATAGGAAGAATACATCACACCAATGTGGTTCGACTTACCGGATTTTGTATTGAGGAATCTAAACGTGCTCTTATTTATGAATTCATGTCCAATGGTTCTCTTGATAAATATATTTCTTCTAAAGAGGATACCATCTCTCTTACTTATAAGCAAATGTATGAGATATCTCTTGGAGTAGCTCGTGGTATTGCTTATTTGCATGAAGGATGTAACATGCAAATTTTGCATTTTGACATCAAGCCCCATAACATCCTTCTCGATGAGAACTTTATCCCCAAAGTTTCAGACTTTGGTCTTGCAAAGCTTTATCCTAATGACATTAGAACTGTCCCTCTAACTGCAGCAAGAGGAACGATTGGTTACATGGCTCCTGAATTATTTTACAAAAATATTGGAGGAGTATCCTACAAGGCTGATGTATATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGTAAGAAAAGAAATTCAGATCAATATGCAGAGCGTTCAAGCGGATTTTTCTATCCCATTTGGGTTTATGATCAATTGAATGAAGAAAAAGAGATTGAAATGGATGAACTTACCAGTGAGGAAATGATTAATGTGAAAAAGATGTTCATAACTGCGTTATGGTGTGTACAATTAAAACCAATTGATCGTCCTTCAATGAACAAAGTAATAGAAATGCTTGAAGGAAATATTGAGAACATCGATATGCCTCCAAAACCTTCTCTATATTCAAATGAAACTATTCAGAATGATCGTGAAGTAACCTTTGATGAAATCGAGTCAGATGCTGATGATGACTCTGTTAGTTTGTTGAAGGAAACAAACTCATAG 2187 0.3658 MSRRKSFSCSAESISLLWFLQIVMVVIVILQHHHHQTCDASTITITNNQTYCPPSSCGKITNIKPPFRLKNDPTTCGDPRYELACENNMTMLTLFSGKYYVKSIDYEDYTIQLVDPGIAEGDCSSIPRYFLTESNFTYNYPIDSNRVDPYEISYYSGYGRGHIIYLKCSKPVKNDPKYVDTSPCGVNSDSKSYVYAAMGYLKVESLRDYCKVKLVAMTYSADNPNRSLSYKEIYGMLQNGFELSWFSGACKQLCGDNQICEYPNSNLKCQSNICSYPMGADGNCDQMSKLRILAEDIILGIIKGALQVIGITKTYTLYKVIGNTKTDASSKEDVSISKIGIEIGRITGKYILPSYIVRFVMGLIVFFVLLINTCRRRHISIYESIEVFLRANTLIPIRYSYKEIKMMTGSFRAKLGEGGFGAVFKGKLRSGPFVAVKVLGKSKGNGQDFINEVATIGRIHHTNVVRLTGFCIEESKRALIYEFMSNGSLDKYISSKEDTISLTYKQMYEISLGVARGIAYLHEGCNMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPNDIRTVPLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASKKRNSDQYAERSSGFFYPIWVYDQLNEEKEIEMDELTSEEMINVKKMFITALWCVQLKPIDRPSMNKVIEMLEGNIENIDMPPKPSLYSNETIQNDREVTFDEIESDADDDSVSLLKETNS* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3140 728 ProSitePatterns Protein kinases ATP-binding region signature. 415 437 IPR017441 GO:0005524
Tpr1g3140 728 Pfam Protein tyrosine and serine/threonine kinase 411 679 IPR001245 GO:0004672|GO:0006468
Tpr1g3140 728 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 20 709 - -
Tpr1g3140 728 SMART serkin_6 409 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3140 728 SUPERFAMILY Protein kinase-like (PK-like) 394 680 IPR011009 -
Tpr1g3140 728 Pfam Wall-associated receptor kinase galacturonan-binding 52 115 IPR025287 GO:0030247
Tpr1g3140 728 PANTHER RUST RESISTANCE KINASE LR10-RELATED 20 709 IPR045874 GO:0004672
Tpr1g3140 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 529 541 IPR008271 GO:0004672|GO:0006468
Tpr1g3140 728 Gene3D Transferase(Phosphotransferase) domain 1 484 691 - -
Tpr1g3140 728 MobiDBLite consensus disorder prediction 709 728 - -
Tpr1g3140 728 ProSiteProfiles Protein kinase domain profile. 409 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3140 728 Gene3D Phosphorylase Kinase; domain 1 389 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3140 Tpr-Chr1 35910576 35921627 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3140 398 720 Receptor kinase-like Gene Family AT5G38280 50.915 8.46e-102 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3140 PK_Tyr_Ser-Thr 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3140 - - mtr:MTR_1g027830 837.025