Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3139 ATGATTTGTAGCCACTGTACTTCTTCCTTCATGATAGCAATAACATTAATACTAATACTGCAGCTTGGGAAAGGCCAGAATATCCCATCCAAAGGGTGTCCCTTCAATATATCTTGTACAAATCATAACAAGATTCTTGAAATACCTGCTTATCCAGTCCCTATAAAACTCATAGTAAATGACATTAACTACACATCACAAATATTACAAGCGCGTGATCCAGAAAATTGTCTTTCACGACTCTTATTTGAGCACAATTTCTCTTTATCAATTTTTCCTTTGCGGATTGACGATCTTCCTAATTATAGTTATAATGTTAGTTTCTTTGATTGTTCTTCGCTAGGAGATGGTTATGCGATAAAGGACACCCATATAAGCTTTGATAATCAGCAATACCAAGACATGATTTCTTGTCCTATTTATATCGCACAATTTGATGAAGATGTGGTTCAATCTAACCTTGTATTCTGCACCAAACTGTCTCAACGAGTTTCGCCCCTTATTCTTTCGCAAGAATCTCTATATGAGATACGACTAAATTCAATCACATTGTCTTGGTCAGAAACAAATCTTGACAAAGGATGCTTCAAATGCAAGCACAAATCAAAGAAGAAGATTATTTTAACCTCTGCAGGTGTAGTCATTGGCTCAACTATGCTTGTTCTTATATTTGCCATTTTCCAAATATATGGCTATTTTAAGATGAAAGATGAAGATTATGAAAGAATTGAAAACTTTTTGAAGGATTACAGAGCTTTAAAGCCAACTAGGTTCTCTTATGCAGACTTAAAGAGAATTACACATAATTTTACAGATAAGTTAGGTGAAGGGGCTCATGGTGCTGTTTATAAAGGTAAATTGTCGAACCAAATTTTGGTTGCTGTGAAGATTCTTAATAATGCAGAGGGAGACGGGAACGAGTTCATAAATGAAGTGGGAACTATGGGCAAAATTCACCATCTCAACGTAGTTCGTTTGCTTGGCTTCTGCGCAGACGGATTTCGTCGTGCTTTAGTGTATGACTTTTTTCCAAATGGTTCATTGGAGAAATTCATTTCTCCTTCGAACAGCAAAGATAATTTCCTTGGATGGGATAAGTTAGAACAAATTGCTCTAGGCATAGCTAATGGCATCGAGTATCTCCACCAAGGTTGTGATCAAAGAATTCTACACTTTGATATCAATCCTCATAATATCTTGATAGATGATAATTTCACTCCCAAAATCACGGATTTTGGTTTGGCTAAGATGTGTTCGAAAAATCAAAGTATTGTATCCATGACTACAGCTAAGGGAACATTAGGCTACATGGCACCTGAAGTTTTTTCAAGAAACTTCGGAAATGTCTCATATAAGTCTGATATATATAGTTATGGTATGTTGCTATTAGAGATGGTTGGAGGAAGAAAGAATACAAAAACAACTAGTGGCGAAGAAAATGTTCAAGTTGAGTATCCAGAATGGATCCATAATTTGCTTGAAGGAGGAGATATACAAATCCCTATCGATGAAGAAGGAGATTTCAAAATTGCAAAAAAACTAGCAACCGTGGGACTTTGGTGTATCCAATGGCACCCTTTGCATCGTCCTCCAATGAAAGCTGTGGTACAAATGCTTCAAGGAGAGGGGGACAAATTAAAAGTACCAAGCAATCCTTTCGGACCAACAACTACGACTAGTACAATTGCTAATATTGGTGTAGAACGTATGAATTTGGAGTTGGATGTGATTGAAGAGTTAGATTAG 1746 0.3643 MICSHCTSSFMIAITLILILQLGKGQNIPSKGCPFNISCTNHNKILEIPAYPVPIKLIVNDINYTSQILQARDPENCLSRLLFEHNFSLSIFPLRIDDLPNYSYNVSFFDCSSLGDGYAIKDTHISFDNQQYQDMISCPIYIAQFDEDVVQSNLVFCTKLSQRVSPLILSQESLYEIRLNSITLSWSETNLDKGCFKCKHKSKKKIILTSAGVVIGSTMLVLIFAIFQIYGYFKMKDEDYERIENFLKDYRALKPTRFSYADLKRITHNFTDKLGEGAHGAVYKGKLSNQILVAVKILNNAEGDGNEFINEVGTMGKIHHLNVVRLLGFCADGFRRALVYDFFPNGSLEKFISPSNSKDNFLGWDKLEQIALGIANGIEYLHQGCDQRILHFDINPHNILIDDNFTPKITDFGLAKMCSKNQSIVSMTTAKGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTKTTSGEENVQVEYPEWIHNLLEGGDIQIPIDEEGDFKIAKKLATVGLWCIQWHPLHRPPMKAVVQMLQGEGDKLKVPSNPFGPTTTTSTIANIGVERMNLELDVIEELD* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3139 581 PANTHER RUST RESISTANCE KINASE LR10-RELATED 21 580 IPR045874 GO:0004672
Tpr1g3139 581 ProSiteProfiles Protein kinase domain profile. 268 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3139 581 SUPERFAMILY Protein kinase-like (PK-like) 250 539 IPR011009 -
Tpr1g3139 581 Gene3D Phosphorylase Kinase; domain 1 242 342 - -
Tpr1g3139 581 Pfam Protein kinase domain 271 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3139 581 Gene3D Transferase(Phosphotransferase) domain 1 343 548 - -
Tpr1g3139 581 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 21 580 - -
Tpr1g3139 581 ProSitePatterns Protein kinases ATP-binding region signature. 274 296 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3139 Tpr-Chr1 35907877 35910050 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3139 234 562 Receptor kinase-like Gene Family AT1G66910 47.164 1.13e-103 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3139 Pkinase 9.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3139 - - adu:110273083 649.432