Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3130 ATGAGCGATAATATGGATTCATTCTCTATTTTTGGAGGAAGAGCTAGATATGTGATGATAATGTTTCTTTTCTTTTTTCTACTTCCACACAAAACTTATCCCAAATCCCAGCCTTGTGTTTCTTCTTCCTGTGGGAAAATTTCCAACATAACCTATCCATTCCGACTAAAACACGACCCCGACCACTGTGGCAACCATAAGTACGAGTTGGATTGTGTGAACAACGTTACGGTATTGAAGTTATTTGATGGTGAATATTTTGTAGAATCAATCAATTACAACAATTACACAATCCGAATTGTTGATCATAACATTCAACCCAAAAATTGCTCCCCTCTCCCCCGCTTCTTCTTATACCGCCGCAATTTCACTTATTATAAAACGTATCCATACACCGAGTACTTTGACTATAAAAATAATTCATACCAGTACACCTTAAATGTATCGGATACCATGCCTAGTTATTATATAATTGATTTATCTATGCCTGTAATATACATGAAGTGTACAAGTCCACCTAGTAAGGTTGTGGATAGATATTATGCGGATACTGCTTCATGCGTGGATCAATACACATACGTTATTGTTGGTGACCCACCATTTGGAATTTTGGAGCCTCAATGCCGTGTCAAACTTGTTACTCTCACATCCTTATGGGGAGGTAATCTTTCATACATTGATATTCACAAGGGGTTAAGCTATGGATTTGAAATTTCATGGATGCAAGTCTCCTGTCATTGTGATGAATGCTATCTCAATAATACCATCGGCGAGCTTCAGTGTGGCATACCCTATTGTCCTTTTGACTCTTGTGGATATTGGGCAACCAAGTTCCGCCTTCTGTATGATTATGTTGGTGGAATTTACGACGGACTTCGGGAGCTGACAGGCATGGATAAGGTAGGACTTCTGCATCTGCTAGACGATAGGACGGAGGGAGTATATAAGTCAAGTATTGACATATACAAAGCAGGAATAGTTACAGGAAGATATGTTTTGCCATACCTTGCAGCTAAAGTTATATTGGGCATCATACTTTTCTCTGTGTTGTTGATCTATACATACCGAAGAAGACATGCATCAATATATGAAAACATCGAAGATTTTCTGCAAGGTAATACTCTTATGCCAATAAGGTATTCATACAAAGAGATAAAGCAGATGACAAAAGGTTTCAAGGTAAAATTGGGTGAAGGAGGTTATGGAGATGTGTATAGAGGAAATCTAATAAGTGGACCATTTGTAGCCATAAAGATGTTGAAGATAAAATCAAATGCTACTGGGCAAGAATTCATAAGTGAAGTTGCAACCATAGGAAGAATATACCATTCAAATGTCGTAAGACTTATTGGGTTTTGTGTCGAAGGATCAAAACGCGCTCTTGTCTATGAGTACATGCCCAATGGCTCACTTGACAAATATATTTTCAACAAAGAGGGAGCTATATCTTTAACTTACAACCAAATATACGAGATATCTCTTGGAGTAGCGCGTGGAATTTCTTATCTGCATCAGGGCTGTGATATGCAAATATTACATTTTGATATTAAGCCTCATAATATCCTTCTTGATGAAAATTTCGTCCCTAAAGTTTCGGACTTTGGTCTTGCAAAGCTTTATCCTATTGACAATAGCATTGTCACTTTGACAGCAGCCAGAGGAACAATTGGATACATGGCTCCTGAATTGTTCTACTATAATATCGGAGGGATATCATATAAGGCTGATGTGTATAGCTTTGGAATGCTTTTGATTGAAATGGCAAGTAGGAGAAGAAATTTGAATCCACAAGCTGAACATTCAAGTGAACTTTACTTTCCCTTTTGGATTTATGATCAATTGTATAAAAATAGAGAGAGGGAAATGGAAGATGTTATCATGGAAGAAATTAATGATGTTTTGAAGAAAATGTTCCTAGTTGCACTTTGGTGTATACAGTTGAAACCCATTGATCGTCCTTCAATGAACAAAGTAGTGGAGATGCTTGAAGGAGATATCGGAAATATTGAAATGCCTCCAAAGCCTTTACTATATCCACATGAAACAATTCAAGAGAATTTTAATATCAACTCAGATGAAACTGTATCAGATACTGGCTCTACCAGTTATGTGGAGGAAATTCCAACCAATCCTTTATTGAAGTATTCAGCTTAA 2154 0.3709 MSDNMDSFSIFGGRARYVMIMFLFFFLLPHKTYPKSQPCVSSSCGKISNITYPFRLKHDPDHCGNHKYELDCVNNVTVLKLFDGEYFVESINYNNYTIRIVDHNIQPKNCSPLPRFFLYRRNFTYYKTYPYTEYFDYKNNSYQYTLNVSDTMPSYYIIDLSMPVIYMKCTSPPSKVVDRYYADTASCVDQYTYVIVGDPPFGILEPQCRVKLVTLTSLWGGNLSYIDIHKGLSYGFEISWMQVSCHCDECYLNNTIGELQCGIPYCPFDSCGYWATKFRLLYDYVGGIYDGLRELTGMDKVGLLHLLDDRTEGVYKSSIDIYKAGIVTGRYVLPYLAAKVILGIILFSVLLIYTYRRRHASIYENIEDFLQGNTLMPIRYSYKEIKQMTKGFKVKLGEGGYGDVYRGNLISGPFVAIKMLKIKSNATGQEFISEVATIGRIYHSNVVRLIGFCVEGSKRALVYEYMPNGSLDKYIFNKEGAISLTYNQIYEISLGVARGISYLHQGCDMQILHFDIKPHNILLDENFVPKVSDFGLAKLYPIDNSIVTLTAARGTIGYMAPELFYYNIGGISYKADVYSFGMLLIEMASRRRNLNPQAEHSSELYFPFWIYDQLYKNREREMEDVIMEEINDVLKKMFLVALWCIQLKPIDRPSMNKVVEMLEGDIGNIEMPPKPLLYPHETIQENFNINSDETVSDTGSTSYVEEIPTNPLLKYSA* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3130 717 Gene3D Phosphorylase Kinase; domain 1 367 465 - -
Tpr1g3130 717 Gene3D Transferase(Phosphotransferase) domain 1 466 669 - -
Tpr1g3130 717 PANTHER RUST RESISTANCE KINASE LR10-RELATED 18 693 IPR045874 GO:0004672
Tpr1g3130 717 SUPERFAMILY Protein kinase-like (PK-like) 375 663 IPR011009 -
Tpr1g3130 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 511 523 IPR008271 GO:0004672|GO:0006468
Tpr1g3130 717 CDD STKc_IRAK 396 664 - -
Tpr1g3130 717 Pfam Wall-associated receptor kinase galacturonan-binding 39 102 IPR025287 GO:0030247
Tpr1g3130 717 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 18 693 - -
Tpr1g3130 717 ProSitePatterns Protein kinases ATP-binding region signature. 396 418 IPR017441 GO:0005524
Tpr1g3130 717 Pfam Protein kinase domain 394 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3130 717 SMART serkin_6 390 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3130 717 ProSiteProfiles Protein kinase domain profile. 390 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3130 Tpr-Chr1 35799035 35803692 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3130 330 702 Receptor kinase-like Gene Family AT4G18250 45.026 7.52e-102 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3130 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3130 - - cam:101508554 1018.84