Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3127 ATGTCTTGGAAAATGCTTGTTAATCTAATTCTAATTGCAATTATGATCCTCCTAAACCCTCTTCTTTGCCTAACCGAAACAAATCATCAATGCTCCCATTCATCTTGTGGCAATATAGAAAACATAACCTACCCTTTTCGTCTAAAAGGCGATCCCGAAAACTGTGGAGATCCAAATTATGAACTTTCATGTGAGAACAATCAAACAATACTAAATCTATACAATGGAAAATACATTGTAGAATCCATCAACTACAATAATTCCACAATAAGAGTAACAGATTCAGGTCTCAACAAAGAAAATTGCTCTTCAACACCTCTCTACACTTTAACAAATGAAAATTTCACAACTGAAAAACCATATAGCTTGTTAAATGATAATAACTTAGAAACCATAGCATTTATAAACTGTGCAGCTTCAATTAATTCTCCTCTTTACATTGATACTTCATCTTGTATCAAAGGATTAATCAACTCTTCCAATTATGCTGTGTTTGGTGAGTTGAAGTTATCTGAATTGGAAGATTCATGCAGCATACTAGTGATGGTTATGATGATGAATTCAAATTTGAACAAAGGTGACAATAAATTTTCATATATGAATATTCATCAGCAACTTGTTTATGGATTAGAGCTTTCTTGGCATGAGATATTCTGCAAAGAGTGTCAAGGTAGAGGGTACTGTAAGTTGAACAATAACAATGAAGTCATTGGTTGTTCAAGAACTAGACCTTGTAGTGATGACTATACATCCTCTTTTAAATGTGCTTTAAGAGCGGTTACCGATACAATCCATGACTTGGTTGAAGGTCCTAACAAACTTGGAGCTATCATTGGACTAATTCTTCTAATAAGAATCATAGGAGGAGTACTGTTTATTCCTATGTATATGATATATAAATGGAGAAGGAGGCATTTATCTGCATATGATTCAGTTGAAGAGTTTCTTAAAACTCACAACAATCTCATGCCAATAAGATACTCTTACTCAGACATTAAAAAAATGACAAAAGGATTCAAGGATAAACTTGGTGAAGGTGGTTATGGTTCTGTTTACAAAGGACAACTTCGCAACGGTGATCTCGTAGCAATCAAGATGCTAGGTGGAAAATCAAGAGCAAATGGACAAGAATTCATCAATGAAGTTGCTACAATTGGAACAATCCATCATGTTAATGTTGTTCGCCTTATTGGATTTTGTGTTGAGAAAACAAAAAGAGCACTTGTTTATGAGTTCATGCCTAATGGTTCACTAGACAAACATATTTTCTCTAGAGAAAGAATGAATATTCCTTTGAGTTGTGAAAAAATGTTTGATATAGCTCTTGGTGTAGCGCGCGGTATTGAATATCTACATAGAGGATGTGACATGAGGATTTTGCATTTTGACATTAAGCCTCATAATATTCTTCTTGATGTGAATTTCAGTCCAAAGGTTTCGGATTTTGGACTAGCAAAGTTATATCCAATTGATAATAGCATTGTGTCGCTTACTGCTGCAAGAGGAACGATGGGATACATGGCGCCGGAATTGTTCTATAAGAACATTGGAGGAGTATCTTACAAAGCTGATGTTTATAGTTTTGGAATGTTGTTAATGGAAATGGCAAGTAGGAGAAGGAACATGAATGAGGGTGAAGATCATAAGAGTCAAGCTTATTTCCCTTCTTGGGTTTATGATCAATTTAGCGAAGGGAAAGAGATAGAAATGGGGAATGGTACGGAGGAGGAAGAGAAGATATTGAAGAAGATGATAATAGTTGCATTGTGGTGTATACAGATGAAACCAAGTGATCGTCCTTCGATGAACAAAGTGGTTGAGTTACTTGAAGGAGATGTTGAGTCATTGGAAATGCCTCCTAAGCCATTTCAAACTCCAAAAGGAATGCCTGTACAAGGCATTGGACAATTCAGAAATCTACCTTGGTTACTACCTGGAGATTCTACAAATTCACTTACCATCGTTGTAAATCGACATTAA 1980 0.3535 MSWKMLVNLILIAIMILLNPLLCLTETNHQCSHSSCGNIENITYPFRLKGDPENCGDPNYELSCENNQTILNLYNGKYIVESINYNNSTIRVTDSGLNKENCSSTPLYTLTNENFTTEKPYSLLNDNNLETIAFINCAASINSPLYIDTSSCIKGLINSSNYAVFGELKLSELEDSCSILVMVMMMNSNLNKGDNKFSYMNIHQQLVYGLELSWHEIFCKECQGRGYCKLNNNNEVIGCSRTRPCSDDYTSSFKCALRAVTDTIHDLVEGPNKLGAIIGLILLIRIIGGVLFIPMYMIYKWRRRHLSAYDSVEEFLKTHNNLMPIRYSYSDIKKMTKGFKDKLGEGGYGSVYKGQLRNGDLVAIKMLGGKSRANGQEFINEVATIGTIHHVNVVRLIGFCVEKTKRALVYEFMPNGSLDKHIFSRERMNIPLSCEKMFDIALGVARGIEYLHRGCDMRILHFDIKPHNILLDVNFSPKVSDFGLAKLYPIDNSIVSLTAARGTMGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRRNMNEGEDHKSQAYFPSWVYDQFSEGKEIEMGNGTEEEEKILKKMIIVALWCIQMKPSDRPSMNKVVELLEGDVESLEMPPKPFQTPKGMPVQGIGQFRNLPWLLPGDSTNSLTIVVNRH* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3127 659 CDD STKc_IRAK 343 611 - -
Tpr1g3127 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Tpr1g3127 659 Gene3D Transferase(Phosphotransferase) domain 1 413 618 - -
Tpr1g3127 659 PANTHER RUST RESISTANCE KINASE LR10-RELATED 277 630 IPR045874 GO:0004672
Tpr1g3127 659 PANTHER RUST RESISTANCE KINASE LR10-RELATED 11 259 IPR045874 GO:0004672
Tpr1g3127 659 SUPERFAMILY Protein kinase-like (PK-like) 318 609 IPR011009 -
Tpr1g3127 659 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Tpr1g3127 659 SMART serkin_6 337 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3127 659 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 277 630 - -
Tpr1g3127 659 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 11 259 - -
Tpr1g3127 659 Gene3D Phosphorylase Kinase; domain 1 311 412 - -
Tpr1g3127 659 Pfam Wall-associated receptor kinase galacturonan-binding 31 94 IPR025287 GO:0030247
Tpr1g3127 659 ProSiteProfiles Protein kinase domain profile. 337 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3127 659 Pfam Protein kinase domain 340 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3127 Tpr-Chr1 35745476 35749839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3127 10 637 Receptor kinase-like Gene Family AT5G38260 35.139 1.90e-109 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3127 Pkinase 9.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3127 - - hbr:110665770 696.427