Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3110 ATGGAAACTCAAAAATTTCCAATAGATGATGACACTTTATTATTATCTGATATTTTCAATGAGACAGAGTTTGGAACAGAGGATCTTTTTTCCATTTTGGAAAATTTCAATAACTTTCCTCCCATTATAAATGAGCAAAACTCAAAAACAACTTCTTCAACTGCTCTTCAAGATTTTGAAACTGAGCTTGCTGAAACATCACACAAATGCAAGAGACAGAAGATTGTTCCTAGTACTATTGAGGAACCAAATAACAATGATGGACAACCTAGAATGTCGCATATCGCGGTGGAGCGTAATCGGAGGAAGCAAATGAATGAGCAATTATCTATCTTGAAGTCACTTATGCCTTGCTTTTATGTCAAAAGGGGAGACCAAGCATCAATAGTTGAAGGAGTAATTGACTACATAAATGAGTTACATCAACTAGTACAATGCCTAGAATCCAAGAAACAAAGAAAAGTTTACAATGAAGTACTAAGTCCAAGACTATTAATTTCAAGTCCAAGACCTTCACCACTAATTAGTCCTAGAACAATTTTACCAATTAGTCCAAGAACTCCACATTCACAACAATGGTTGCAACAATGTGGTGGTTATCTTTCATCTGAGCCATCTCCTACTTCTTCGGCATCTTCCATCAACGACAACATCAATGAGCTTGTCGCGAATTCAAAGTCTTCGGTTGCTGATGTTGAGGTTAAGTTTTGTGGTTCTCATTTGATTTTGAAAACAGTTTCGTCGCCAATTCCCGGACAAGCTTTGAGAATTATGTCTGTTCTTGAAGATTTAGCTCTTGAAATTGTTCATGCTAGTGTTAATACTGCTGATGAAACCATGTTAAACTCTTTCACTATTAAGATTGGAATTGAATGTCAACTTAGTGCTGAAGAACTTGCTCAACAAATTCAACAAACATTCTGTTAA 927 0.3581 METQKFPIDDDTLLLSDIFNETEFGTEDLFSILENFNNFPPIINEQNSKTTSSTALQDFETELAETSHKCKRQKIVPSTIEEPNNNDGQPRMSHIAVERNRRKQMNEQLSILKSLMPCFYVKRGDQASIVEGVIDYINELHQLVQCLESKKQRKVYNEVLSPRLLISSPRPSPLISPRTILPISPRTPHSQQWLQQCGGYLSSEPSPTSSASSINDNINELVANSKSSVADVEVKFCGSHLILKTVSSPIPGQALRIMSVLEDLALEIVHASVNTADETMLNSFTIKIGIECQLSAEELAQQIQQTFC* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3110 308 Pfam Helix-loop-helix DNA-binding domain 91 140 IPR011598 GO:0046983
Tpr1g3110 308 CDD bHLH_AtFAMA_like 92 163 - -
Tpr1g3110 308 SMART finulus 95 146 IPR011598 GO:0046983
Tpr1g3110 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 89 140 IPR011598 GO:0046983
Tpr1g3110 308 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 17 308 - -
Tpr1g3110 308 PANTHER TRANSCRIPTION FACTOR FAMA 17 308 IPR044283 GO:0003700|GO:0010052
Tpr1g3110 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 88 157 IPR036638 GO:0046983
Tpr1g3110 308 Gene3D - 81 155 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3110 Tpr-Chr1 35588819 35591973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3110 19 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 44.179 2.88e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g3110 HLH 2.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3110 K20558 - gmx:100777437 336.265