Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3109 ATGGAGCACGGAAGCCCTTCGTCTAACCACAATCGTTCAACAGCATCAAGCTCTGTTATTTTTGAGAAACATGTACCTCCAAAAGAAGGCGAGGAAGTGAATATTCTCATTGTGCATTTGACAAGAATTATGCGGCGTGCTCTTCCCCGAAATGCAAAAATCAATAATGGTGCTAAGGAGTCGATTCAATTGTGCGTGTCCGAATTTATGGGCATTATCACAACTAAGGCTAACGAGCGATGCAAGGCAGAGCATCGAAAGATCATTACTGCAGATGATTTAATATGGGCCATGGAAAAGTTCGGCTTTGATGACTATGTCGGGCCTCTCAAGCTTTACCTAAAAAATTATCGCGACCATAAAGATCAGACCGGTGACATTTAG 384 0.4271 MEHGSPSSNHNRSTASSSVIFEKHVPPKEGEEVNILIVHLTRIMRRALPRNAKINNGAKESIQLCVSEFMGIITTKANERCKAEHRKIITADDLIWAMEKFGFDDYVGPLKLYLKNYRDHKDQTGDI* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3109 127 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 41 98 IPR003958 -
Tpr1g3109 127 Gene3D Histone, subunit A 28 126 IPR009072 GO:0046982
Tpr1g3109 127 MobiDBLite consensus disorder prediction 1 20 - -
Tpr1g3109 127 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Tpr1g3109 127 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Tpr1g3109 127 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Tpr1g3109 127 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 28 124 - -
Tpr1g3109 127 SUPERFAMILY Histone-fold 40 124 IPR009072 GO:0046982
Tpr1g3109 127 MobiDBLite consensus disorder prediction 1 23 - -
Tpr1g3109 127 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 28 124 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3109 Tpr-Chr1 35582556 35583879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3109 37 125 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.180 1.06e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tpr1g3109 CBFD_NFYB_HMF 2.4e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3109 K08065 - oeu:111407182 113.62