Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3103 ATGGAACAACAACAACAACAACAGAGTATCCTATGTAAAACCACTGTCCACCACCAAACTTTTACTAAGAAATACACAAAACCAAACAAGAGAAATGACACTAATAGTAATCAAATCGAATTACCACGCGTGATTCGATTAACGGTTACTGATGCAGATGCTACTGATTCATCCAGTGATGAAGAAACACAGTGTTTGATTCCCCGTAGGAGAATCAAACACTATGTTAATCAGATTGATATTGAAACCGTTGTTGAGACAACGGTTTCTGGTAGTAAGAAAAGGTCTTCTAGAGAAACTAAATTGAAATCTTCTAGAAGACCGGAGAAGAAAGTTGCTGTTGCTGTTGCTGTTGCTAAAGATGAAAGAAAGTTCCGCGGTGTTCGGATGAGACCGTGGGGGAAATGGGCGGCTGAGATTAGAGATCCAGGGACTCGAGTTCGGTTATGGTTAGGAACATTCAACACTGCTGAAGAAGCTGCTATGGTTTATGATGCTGCAGCGATTAAATTTCGCGGCAAAGATGCTGTTACAAACTTCGGTATACCGGAGTTTGAAAATGCTGAAAAAATTGAAGTTGTTAAGGAGAAAACAAAAATCAATATTAATAATGTGAAGACGGAGATTTCTGTTTCCGGTGAAGATTCCGGCGATGAGTTTGTTAATTTATCTTCTCCGACGTCTGTTCTCCGGTTTAGACGAGAGGAAATGAATGAAAATGCAAAAAAACCGTTTAATGAAGATCACGAGTCTGTTGTTCAACCGGTTGAACCGTTTGGTGAATGTGAAGGTGAGACGAGGTTTTTCGAAGAAACTAATGAGTTTTTTCGACAAGAAATGGATGATGTGTTTAATTTTCCAACAACTTGTGAATATTTTTCAAGTATGTTTGATGAAACTCCTATGGAATTTTTTGATGAAACGACAGAGGTTTTGGTTAATGAGTGTCGTTTAAGTGATCATGTGGAATTTGATAAAACACACTCACGTTCTTCTTCATCATCAGAAGCTTTATGTGAAGGGGATGAAATTCTTGATGATATTTTGTTAGGATTAGAACCTCTTGTTGTGCTTTGA 1077 0.3807 MEQQQQQQSILCKTTVHHQTFTKKYTKPNKRNDTNSNQIELPRVIRLTVTDADATDSSSDEETQCLIPRRRIKHYVNQIDIETVVETTVSGSKKRSSRETKLKSSRRPEKKVAVAVAVAKDERKFRGVRMRPWGKWAAEIRDPGTRVRLWLGTFNTAEEAAMVYDAAAIKFRGKDAVTNFGIPEFENAEKIEVVKEKTKININNVKTEISVSGEDSGDEFVNLSSPTSVLRFRREEMNENAKKPFNEDHESVVQPVEPFGECEGETRFFEETNEFFRQEMDDVFNFPTTCEYFSSMFDETPMEFFDETTEVLVNECRLSDHVEFDKTHSRSSSSSEALCEGDEILDDILLGLEPLVVL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3103 358 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF4-LIKE 17 304 - -
Tpr1g3103 358 MobiDBLite consensus disorder prediction 92 107 - -
Tpr1g3103 358 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 304 - -
Tpr1g3103 358 Gene3D AP2/ERF domain 123 182 IPR036955 GO:0003700|GO:0006355
Tpr1g3103 358 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Tpr1g3103 358 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Tpr1g3103 358 CDD AP2 124 180 IPR001471 GO:0003700|GO:0006355
Tpr1g3103 358 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Tpr1g3103 358 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
Tpr1g3103 358 MobiDBLite consensus disorder prediction 88 107 - -
Tpr1g3103 358 Pfam AP2 domain 124 173 IPR001471 GO:0003700|GO:0006355
Tpr1g3103 358 SUPERFAMILY DNA-binding domain 124 181 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3103 Tpr-Chr1 35522973 35524903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3103 18 305 AP2-EREBP Transcription Factor Family AT4G27950 37.380 3.57e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr1g3103 AP2 5.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3103 - - lja:Lj0g3v0153129.1 235.343