Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3086 ATGGCTTTTTATCAAGGCCTGGATGCAGCTTTGTACCTGTCACTGTCCAAAGTGCTTCCTGAATTAAAAAAATCATGTGGCAAACCAAGACCAGTTCTTGCTCTCAGCTGTGTGTCAGATAGTATGCAGACATTAGACGCACTCCTAACATGCAAGCCGAAAAGAAAAACGGATCAAAATATTCCAATTACGACAAAATTGTCTCCGACATCTCAACAAGAAGAAGTCTGTGGCGGTACTGCTGGTCTATCATTTGAGGAGATAACGAAAGACATACCTTTCCCTGTTGAATACTATACACTAACAGGAAAAGATCTGGAAGAGAATGAATATCCTGTTAATAAGCCAGGTTTTCTTTCTACTCTTCCTGCTCCTCTGGGATCTCGTTTTTATAAGATGGTAGCACTTGACTGTGAGATGTGCATAACAGGTGAAGGGTTTGAGCTAACAAGAGTTACTCTAGTGGATGTCAAAGGACGGGTTTTGTTAGATGAATTGGTAAAACCTTCAAATCATATCATTGATTACAATACAAGATATAGTGGAATAACGGACGATATGTTAGATGGGGTGACGACAAGTTTGGCAGACATTCAGGAAGAGTTCCGAAAATTGGTTTACAAAGAAACTATTCTTGTTGGGCATGCTTTGGAAAATGATTTACTAGCATTGAAAATATCACATGACTTGGTGATTGACACAGCAGTATTATACAAACACCCCTGGGGGTCTCCCTATAAATCCGCTCTACGGTTTCTTACTAAAAGATTTCTTTCAAGGGAGATACAGCAATCAAGGAATGGACACGATAGCATTGAAGATGCTAGAGCTACCATGGAATTAGCACTATTGAAGATCAGACATGGCAAGTGA 873 0.3986 MAFYQGLDAALYLSLSKVLPELKKSCGKPRPVLALSCVSDSMQTLDALLTCKPKRKTDQNIPITTKLSPTSQQEEVCGGTAGLSFEEITKDIPFPVEYYTLTGKDLEENEYPVNKPGFLSTLPAPLGSRFYKMVALDCEMCITGEGFELTRVTLVDVKGRVLLDELVKPSNHIIDYNTRYSGITDDMLDGVTTSLADIQEEFRKLVYKETILVGHALENDLLALKISHDLVIDTAVLYKHPWGSPYKSALRFLTKRFLSREIQQSRNGHDSIEDARATMELALLKIRHGK* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3086 290 Pfam Exonuclease 134 281 IPR013520 -
Tpr1g3086 290 CDD REX1_like 134 283 IPR034922 -
Tpr1g3086 290 PANTHER LD29573P 2 290 - -
Tpr1g3086 290 Gene3D - 130 290 IPR036397 GO:0003676
Tpr1g3086 290 SMART exoiiiendus 132 290 IPR013520 -
Tpr1g3086 290 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 2 290 - -
Tpr1g3086 290 SUPERFAMILY Ribonuclease H-like 133 285 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3086 Tpr-Chr1 35379626 35384765 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3086 128 281 C2H2 Transcription Factor Family AT5G40310 30.409 5.53e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3086 K14570 - gmx:100802793 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3086 1 35379626 35384765 Tpr1g3086 1 35379626 35384765 ECH