Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3085 ATGAAATCCTGTCAGAATAAATACGAAACCCTATCTAACGTCGAAGAAGAAGAAGATGATTCCAACAAATGCACCAACTTCTACGATATCTATGGTCCCCAAGCCAAAGCAGATGTTGTTTTCAAGGAAAATGATAATTCTAATCTGAATCTCGCTGACATTCAAGGACTTGTAACTTGGGTGCTTGGCGAAGGATTCATGCCATCATGGGCTTTTATCAAGAATAAACCTCTTATTCTCAAAGTGGTTATGCTCTATATGCCAGGCCTGGATGCAGCATTGTACTTGTCACTGTCCAAAGCGCTTCCTAATTTAAAAAAATCATGTGGCAAACCAAGACCAGTCCTTGCTCTCAGCTGTGTATCAGATAGTATGCAAACAATAGACGCACTCCTAACATGCAAGCAGAAAAGAAAAAGGGATCAAGATGATTCAACTACGACGAAAAAATCTACTCTGACATCTCAACAAGAAGAAGTCTGTGGTGGTACTGCCGGTCTATCATTTAAGGAGATTACGAAAGATATACCTTTCCCTGTTGCATACTATACACTAACAGAGAAAGATCTGGAAGAGAATGAATATCCTGTTAATAAGCCAGATTTTCTATCTACTCTTCCTGCTCCTCCGGGATCTCCTTTTTATGAGATGGTAGCACTTGACTGTGAGATGTGCATAACAGGTGAGGGGTTTGAGCTGACAAGAGTTACTCTAGTGGATGTCAAAGGACAGGTTTTGTTAGATGAATTGGTTAAACCTTCAAATCATATCACTGATTACAATACAAGATTTAGTGGAATAACGGCCGAGATGTTAGATGGGGTGACGACAAGTCTGACACACATTCAGGAAAAGTTCCGAAAACTGGTTTATAAAGAAACTATTCTTGTTGGGCATTCTTTGGAAAATGATTTATTAGCATTGAAGATATCACATGACTTAGTCATTGACACAGCAGTATTATACAAACACCCACGAGGGTCTTCCCATAAATCCGCTCTACGGTTTCTTACTAAAAGATTTCTTTCAAGGGAGATACAACAATCAGGGAATGGGCATGACAGCATTGAAGATGCTAGAGCTACCATGGAATTAGCACTATTGAAGATCAGAAATGGGCCTGGCTTTGGTGCTCCTCCATCCTTTATGCGAAAAAAGCTTCTTTCAATTTTGAGCGAGTCCGGCAAAACTTCTTCAATGATTGATGATATATCGATTGTAAAACGATTTGCCTCCGAGTCCTCTAATGCAATTCCAGTGACGTCTGATGAAGACGCGCTTGCAAAAACCATCAAGGAGTTGAAGAATGAAAAGGTGCATTTTATCTGGACTCAATTTTCAGAGTTACACACACACTTTAAGAAACAAGCCGAGGATTCAGATAGCTTGAACAAAAAACTCGCAGAGATGATTGCATTACATACATGTGAGAAGAGTTCTTCAAAAGGGAAAGGCCTCAAGTCGAATGTATCTGCTGAACTGAAGGAAATTCTTACACGCATGGATAATAGAATTCATAAACTGTACAAGTCATTACCAACAAATGCTATGTTGATAGTTTGCACTGGTCATGGTGACACGGCAGTTGTCCGCAGGTTGAGGAAAATGCTTACGGAAGAGAGTGAACCTAATTTTGGTCGTGAGAAGATTGTGGAAAGCTTGGAAGAGTTTCAGGCTAGAGCTGAAGTAGCCTTGTGTTTTGTAGGTGTAAAACACTGA 1719 0.4002 MKSCQNKYETLSNVEEEEDDSNKCTNFYDIYGPQAKADVVFKENDNSNLNLADIQGLVTWVLGEGFMPSWAFIKNKPLILKVVMLYMPGLDAALYLSLSKALPNLKKSCGKPRPVLALSCVSDSMQTIDALLTCKQKRKRDQDDSTTTKKSTLTSQQEEVCGGTAGLSFKEITKDIPFPVAYYTLTEKDLEENEYPVNKPDFLSTLPAPPGSPFYEMVALDCEMCITGEGFELTRVTLVDVKGQVLLDELVKPSNHITDYNTRFSGITAEMLDGVTTSLTHIQEKFRKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHKSALRFLTKRFLSREIQQSGNGHDSIEDARATMELALLKIRNGPGFGAPPSFMRKKLLSILSESGKTSSMIDDISIVKRFASESSNAIPVTSDEDALAKTIKELKNEKVHFIWTQFSELHTHFKKQAEDSDSLNKKLAEMIALHTCEKSSSKGKGLKSNVSAELKEILTRMDNRIHKLYKSLPTNAMLIVCTGHGDTAVVRRLRKMLTEESEPNFGREKIVESLEEFQARAEVALCFVGVKH* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3085 572 Gene3D - 215 372 IPR036397 GO:0003676
Tpr1g3085 572 Gene3D Alkaline Phosphatase, subunit A 373 564 IPR017850 -
Tpr1g3085 572 SUPERFAMILY Alkaline phosphatase-like 382 527 IPR017850 -
Tpr1g3085 572 SUPERFAMILY Ribonuclease H-like 217 370 IPR012337 -
Tpr1g3085 572 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 15 557 - -
Tpr1g3085 572 Pfam Exonuclease 218 365 IPR013520 -
Tpr1g3085 572 PANTHER LD29573P 15 557 - -
Tpr1g3085 572 CDD REX1_like 218 367 IPR034922 -
Tpr1g3085 572 SMART exoiiiendus 216 375 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3085 Tpr-Chr1 35370139 35378027 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3085 216 365 C2H2 Transcription Factor Family AT5G40310 30.952 1.00e-09 58.5