Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3083 ATGGGAGCACCGAAGAAAAGCTCTGCTAGGGTTTCAGAGGATCACGATGAACTCGTTCGTGTTCCGTTACAAGCGATTCTCATAGCTGATAGTTTCACAACAAAGTTCAGACCTATCACTCTTGAACGCCCCAAAGTGCTATTGCCATTGGTGAATGCTCCGATGATAAATTACACATTGACATGGCTAGAGTCAGCTGGTGTAGAAGAGGTTTTTGTTTTCTGTTGTGCTCATTCGAAGCAGGTGATTAACTATTTGGAGAAATCTGAGTGGTTTAATCAACCTAATTTCACTGTAACAACTATTGAGTCTCAGAATTCTGTCAGTGCTGGAGATGCTCTGCGTGTTATTTACGAGCGCAATGTGATACATGGAGACTTTGTCCTTGTCAGCGGAGATACTGTGAGCAACATGTCGCTTACTCAGGCACTTTTAGAACACAAAGAAAGGAAGAAGAAAGATAGTAATGCTGTAATGACCATGGTTATCAAACGGTCAAAAACTAATCCAGCTATCCACCAGTCTCGACTTGGTACTGATGAAATTTTCATGGCTATTGATCCTGATACCAAGCAACTTTTGTATTATGAGGATAAAGCAGACTATTCAAAAGGCACTCTACATCTCGAAAATTCATTGCTTGCTGATAATCCTTCCCTCTCTCTGCACCATGACAAGCAGGATTGTTACATTGACATCTGCTCACCAGAAGTCCTTAGCCTATTTACAGACAATTTTGACTACCAACATCTTCGGCGTCATTTTGTCAAGGGATTGCTTGTTGATGATATAATGGGATACAAAATTTTTGTTCATGAAATCTGCTCAGACTATGCTGCAAGGATAGACAATTTCCGAAGCTATGACACTGTCAGCAAGGATATAATTCATAGATGGACATATCCACTGGTACCAGATGTTATGAATTTTGGCAACACAACTACTAAGCTTGAAAGACAAGGAATATATCGTGCCTCAGAAATTTCGCAATCACAATCAGCTGTTGTTGGTCCATTCTCTGTTATAGGATTTGGCACCAAAATTGGCAACAACACTAAGATTTTAAATTCTGTTGTTGGAGAAGGATGTAAAATTGGGTCAAATGTACACATAGAGGGATGCTATATTTGGGACAATGTCACCATAGAAGATGGGTGTAAACTTAGGTATGGCATTGTATGTGATGGGGTGACTATGAAATCAGGATCTGCTCTGGAACCTGGTGTTGTATTGTCTTTTAAGGTTGTAGTTGGGAAGGAGTTTGTTGTTCCTACTTATTCACAAGTATCTCTACTACAGCAACCGATTGAGGAAGATAGCGATGAAGAGCTCGAATATGCTGATAGTACTAGTGCCATTACCAGCACACTGGATAAGTCAGATGGAGAGAGTGATTCCGAATTATCAGATACACATTTTAACCCTGCTTCAGAGCTAGGTTTTGGTGGGGTTGGTTATATTTGGCCAAAATGTGAAGGAGGCCACGAGGAAGAGTGGAGGCATTCAGTGGCACCCATTACTGAAGATAAAATTTTGGAGGCAGTGAAAGCTTTGGAAGATGAACTGGAGTTAATTCTTGATGGAAATACTCTTCCACCTTCTGGGGAGCTGAAACCTAATTCTATTGATTCCGATGAAGATGATAATGACGATTTAAGAGATGACTTTGACAAAGAGGTTGAAGAAACTTTTCTCAGAGCTGTGCATGAAAATATACAAGAAAATCATTTGACTTTAGAAGTCAACTCTTTGAAGTTGTCATACAATAAGATAGCTGCTGATTGTGCTGGAGCTTTATTTTATGCAATGATGAAGTATGCTGTAGACATGCCGCATAGTTCAGCAGAGAGGTTGACTCAGAATGTTCAGGCTGTACTTACAAAATGGAAAAAGGTTCTTACATCATATCTGAATGATATGGACGAGCAGATTGAAGTGATTCTAAAATTTGAAGAAATGTGTTTGGAATCTGCTAAGGAGTATGCTCCTTTGTTCACACAGATTTTGCATTACATGTATAATGAAGATATTATAGAAGAAGATGCTATTTTGAGTTGGGAAGATGAGAAGAAAGAAGCAGATGAGTCCGATAAAGTATTTGTTAAGCAAGCACAAACTTTTATTCAATGGCTAAAAGAGGCTCCTGAAGAAGACGATGACAAGGAAGATTAG 2172 0.3936 MGAPKKSSARVSEDHDELVRVPLQAILIADSFTTKFRPITLERPKVLLPLVNAPMINYTLTWLESAGVEEVFVFCCAHSKQVINYLEKSEWFNQPNFTVTTIESQNSVSAGDALRVIYERNVIHGDFVLVSGDTVSNMSLTQALLEHKERKKKDSNAVMTMVIKRSKTNPAIHQSRLGTDEIFMAIDPDTKQLLYYEDKADYSKGTLHLENSLLADNPSLSLHHDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFVHEICSDYAARIDNFRSYDTVSKDIIHRWTYPLVPDVMNFGNTTTKLERQGIYRASEISQSQSAVVGPFSVIGFGTKIGNNTKILNSVVGEGCKIGSNVHIEGCYIWDNVTIEDGCKLRYGIVCDGVTMKSGSALEPGVVLSFKVVVGKEFVVPTYSQVSLLQQPIEEDSDEELEYADSTSAITSTLDKSDGESDSELSDTHFNPASELGFGGVGYIWPKCEGGHEEEWRHSVAPITEDKILEAVKALEDELELILDGNTLPPSGELKPNSIDSDEDDNDDLRDDFDKEVEETFLRAVHENIQENHLTLEVNSLKLSYNKIAADCAGALFYAMMKYAVDMPHSSAERLTQNVQAVLTKWKKVLTSYLNDMDEQIEVILKFEEMCLESAKEYAPLFTQILHYMYNEDIIEEDAILSWEDEKKEADESDKVFVKQAQTFIQWLKEAPEEDDDKED* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3083 723 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Tpr1g3083 723 Gene3D Hexapeptide repeat proteins 317 434 - -
Tpr1g3083 723 Pfam eIF4-gamma/eIF5/eIF2-epsilon 642 720 IPR003307 GO:0005515
Tpr1g3083 723 Pfam Nucleotidyl transferase 27 164 IPR005835 GO:0009058|GO:0016779
Tpr1g3083 723 SMART 542_3 630 717 IPR003307 GO:0005515
Tpr1g3083 723 MobiDBLite consensus disorder prediction 527 549 - -
Tpr1g3083 723 Gene3D - 544 722 - -
Tpr1g3083 723 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 10 723 - -
Tpr1g3083 723 CDD W2_eIF2B_epsilon 558 719 IPR044123 GO:0005085|GO:0031369
Tpr1g3083 723 SUPERFAMILY Nucleotide-diphospho-sugar transferases 20 369 IPR029044 -
Tpr1g3083 723 SUPERFAMILY ARM repeat 555 714 IPR016024 -
Tpr1g3083 723 ProSiteProfiles W2 domain profile. 550 721 IPR003307 GO:0005515
Tpr1g3083 723 CDD LbH_eIF2B_epsilon 341 419 - -
Tpr1g3083 723 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 9 303 IPR029044 -
Tpr1g3083 723 SUPERFAMILY Trimeric LpxA-like enzymes 268 426 IPR011004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3083 Tpr-Chr1 35333749 35344175 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3083 1 714 Eukaryotic Initiation Factors Gene Family AT2G34970 63.624 0.0 928
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3083 K03240 - gmx:100784894 1200.27