Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3074 ATGTCAAAGACAAAGTCATTTCAAGGCGTAAACGTCTTCATGTCGCGAAACCTAGTTCCGCCGGAAGTCTTCGATACGCTTCACGACGCCGTTAAACATAACGGCGCTCAAATTCAACTTTGTTGTGATCCTTCCCGTAATGGTCCCAACGATTATCATATCATTTCCTGCAGCAAACACGAGAAATTTCAAGATCTTAAATCAAAGGGATGTAAAATGCTCGGTCCTAGATGTGTTCTTTTGTGTGCTAAAGAACGAAAGCCTCTGCCTAAACAAGGCTTCACTTGTTGCTTTGCTATGGATGGTGTCAAAATACTTGCCTCTGGTTTTGATGCGGATGAGAAGGTTAAGATAGAAGAATTAGTGACTGAAATGGGGGGAGCTCTGCATACTAAACCGTCGTCAGATTTGAACTTTGTCATCGTGAAAAATGTTTTGGCTCTAAAGTACAAGTGGGCTTTGAATGTCCTGAAGAAACCAATTGTTACTTATGAATGGTTAAAGCAATGCTCAGATGAGCATCGCGTTGTTCCTCAAGAGTCATATAAGGTTCTTCCTTTCTCTGGGTTAAAGATCTGTGTGACTGGAATCTCAGCAGATAAGCGCAAAGAAATGGAAAAGCTTATTTTACAAAATGGTGGAAAATACTCTGCGGAACTGACAAAGAACTGCACACATTTGATTTGTGATGCTCCTGAAGGTGATAAGTATAAGGTGGCGAAACGTTGGGGCCACATTCATATTGTAACAATAAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTGAATGAGGAGTCCTACCCTGTTCAGAGTGGATCTTTATCTTCACGTAAGGTGACCAGACACTTAACAGTGCAACATAGCCAGGAAAAGGATATCGGGAAAATGCAGTCTGGCTCATTCGCAAGAGCTGCAGATTCAAATATGCTAGTTTCTAATTGCGCCGAGTCTATGGATATAGATTCAGAAGCTACACAGTCACAACATACATCGTTTGTTTCAAATGTTTCATTATTTGTTAAAGAGGCAGATGCTGAAGCACCTCCATTACAGACCAGCAATGGATTGAATTTTGATGGTGCTGTTGCCAATGATTCGGAATCTGATGACAATGACCTGTATTTAGCAGAGTGCAGAATATCACTTGTTGGTTTTGAAGCTTCTGAAATGCGGAAGCTAGTTAATTTGGTGCGTAAAGGCGGAGGCTCTCGATACATGTCTTTGAATGATAAGTTGACACATATAGTAATTGGGAATCCTACAGAAATGGAAAAGAAGGATGTAAGGAGTATTGCTGCTCTAGGTGTCGTTTATGTTGTTAAAACCTCATGGCTTGAAGATTGTGACCGTCAAAAGAAACAAGTCCCTGTTCTTCGACGACACATTGCATGTGATCTTGTTCTTCCAAAAGCTAACATAGTAAAAGGAGTGGTTAGTGGCATTGTGCCTATGGATCAAAGTAAAAGCTCAAGCTTTCGCCAAAGCTTCCAGACTGATCAGGGGGTGGGTATTAAGGACTTTGGAGTTACAATGCCAGAATCTTTGGAGAAAAACAAACAAGAGAAACACAATATGGGTATGAATGTTGTCACATTTGGTAAAGCATCGGGTAGAACTATGTCGCAAACTCAAGTTCCTGATAAAAAGTTGAGGTTACAAAAGATTACGCAACATGGCTCCAATGTGCATGTGAAGTCAACAAATGTTTTCAAAGGGAAAACATTTTGTTTCTCAAATTTACTTCCTGAAGAAAGGAGAGGTGAGATTGTTCAATGGATACACCAAGGGGGAGGAGAGATAATAAGTGGGCAAACAAAACAGAGTATCCACTATACTATTGAATGCCATGGTGTAAAACCTTCGATAGGTGATTATGGAAGTACCTATATTTCCAGTCACTGGATACGATCTTGTTTGGAGGATGGATCATTGCTGGATGTTGATAGTCATATTCTTTATTCTCCACTTCCCTGCCGCGTTCCTTTGCCTGGTTTTGAAAGCCTCCGGTTTTGTGTTTCACAATATGACGAGAAAGACAGAATTCTACTTTGGAACTTGTGTAACGTTCTAGGAGCTAAATTTGTGGATAAACTGACTAAGAAGGTGACCCATTTATTGTGTAAATTCGCCAATGGACCCAAGTACGAGGCTTCTTGTAAGTGGGGGATACGAACAGTTACATCCGAGTGGATATTTGAATGTGTCAAACAGAATGGAGTTATTGCCATAGATCAATTTTTGCCCAAAGAAGTCACCACTCAAGACCGAGAGGCAGGAGTTTGCACAGTGAGTCAATTTCCTACCCAGGCTGTTCGAATGATAAATGACATGCCGTCCCAGTTTCCAAGTCAATCACGAAGTTTGAGAAACACGGAAAATCAAAATGTAGATAGTGGAGTTGACAATCATGGGACTCGTTCTAAAATATCAAGCGTTAATAGTAAAAAGGCAAGGCTCATGGAAGAACCTGGCCTGTATAATAAGGTACCTTCTACAGTAAATCCAGGTATTCATGTCTCTGACTTGAATTTGTCTAAAGACAATATGCTCAAAGATGCTCTGGAGGCAACCCATGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACAAGCAAGGTGCATGATCAGAGGTCCCCAGGGAATACAGGGTGTGAGAGAAGTATTTACCCATCTGATTGTTCAGTCGTTCGTGAAGACAATCCAAATCCTCATACTGTCTTCGGATTATCGAAGCACTGGCTGAATAGAAACGGAAGAAATGATAATGATAATAGTGAGACTCCTCAAGACCGAAGACCAGGAATGTATGATGCTTTTAGTGAAACACAAACAGAATCTCAGGTTGTTAGTTATGAAGAAGACTTGTCTGGAAGGCAAATGCTTATAGGAGTTCTAACTCGAAGTAGCATGCAGTGA 2934 0.409 MSKTKSFQGVNVFMSRNLVPPEVFDTLHDAVKHNGAQIQLCCDPSRNGPNDYHIISCSKHEKFQDLKSKGCKMLGPRCVLLCAKERKPLPKQGFTCCFAMDGVKILASGFDADEKVKIEELVTEMGGALHTKPSSDLNFVIVKNVLALKYKWALNVLKKPIVTYEWLKQCSDEHRVVPQESYKVLPFSGLKICVTGISADKRKEMEKLILQNGGKYSAELTKNCTHLICDAPEGDKYKVAKRWGHIHIVTIKWFDQSIARRACLNEESYPVQSGSLSSRKVTRHLTVQHSQEKDIGKMQSGSFARAADSNMLVSNCAESMDIDSEATQSQHTSFVSNVSLFVKEADAEAPPLQTSNGLNFDGAVANDSESDDNDLYLAECRISLVGFEASEMRKLVNLVRKGGGSRYMSLNDKLTHIVIGNPTEMEKKDVRSIAALGVVYVVKTSWLEDCDRQKKQVPVLRRHIACDLVLPKANIVKGVVSGIVPMDQSKSSSFRQSFQTDQGVGIKDFGVTMPESLEKNKQEKHNMGMNVVTFGKASGRTMSQTQVPDKKLRLQKITQHGSNVHVKSTNVFKGKTFCFSNLLPEERRGEIVQWIHQGGGEIISGQTKQSIHYTIECHGVKPSIGDYGSTYISSHWIRSCLEDGSLLDVDSHILYSPLPCRVPLPGFESLRFCVSQYDEKDRILLWNLCNVLGAKFVDKLTKKVTHLLCKFANGPKYEASCKWGIRTVTSEWIFECVKQNGVIAIDQFLPKEVTTQDREAGVCTVSQFPTQAVRMINDMPSQFPSQSRSLRNTENQNVDSGVDNHGTRSKISSVNSKKARLMEEPGLYNKVPSTVNPGIHVSDLNLSKDNMLKDALEATHAVPDVAAAIEDLLEQTSKVHDQRSPGNTGCERSIYPSDCSVVREDNPNPHTVFGLSKHWLNRNGRNDNDNSETPQDRRPGMYDAFSETQTESQVVSYEEDLSGRQMLIGVLTRSSMQ* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3074 977 ProSiteProfiles BRCT domain profile. 182 271 IPR001357 -
Tpr1g3074 977 Gene3D BRCT domain 363 461 IPR036420 -
Tpr1g3074 977 ProSiteProfiles BRCT domain profile. 567 654 IPR001357 -
Tpr1g3074 977 Gene3D BRCT domain 564 660 IPR036420 -
Tpr1g3074 977 SUPERFAMILY BRCT domain 59 183 IPR036420 -
Tpr1g3074 977 SMART BRCT_7 569 644 IPR001357 -
Tpr1g3074 977 SMART BRCT_7 664 740 IPR001357 -
Tpr1g3074 977 SMART BRCT_7 97 174 IPR001357 -
Tpr1g3074 977 SMART BRCT_7 184 261 IPR001357 -
Tpr1g3074 977 SMART BRCT_7 374 454 IPR001357 -
Tpr1g3074 977 CDD BRCT_TopBP1_rpt2_like 665 740 - -
Tpr1g3074 977 SUPERFAMILY BRCT domain 630 751 IPR036420 -
Tpr1g3074 977 CDD BRCT 103 170 - -
Tpr1g3074 977 SUPERFAMILY BRCT domain 570 656 IPR036420 -
Tpr1g3074 977 SUPERFAMILY BRCT domain 372 458 IPR036420 -
Tpr1g3074 977 ProSiteProfiles BRCT domain profile. 372 464 IPR001357 -
Tpr1g3074 977 Gene3D BRCT domain 31 94 IPR036420 -
Tpr1g3074 977 Gene3D BRCT domain 186 272 IPR036420 -
Tpr1g3074 977 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 7 965 - -
Tpr1g3074 977 CDD BRCT_TopBP1_rpt2_like 186 261 - -
Tpr1g3074 977 Pfam BRCA1 C Terminus (BRCT) domain 101 170 IPR001357 -
Tpr1g3074 977 Pfam BRCT domain, a BRCA1 C-terminus domain 569 651 IPR001357 -
Tpr1g3074 977 Gene3D BRCT domain 97 185 IPR036420 -
Tpr1g3074 977 ProSiteProfiles BRCT domain profile. 667 750 IPR001357 -
Tpr1g3074 977 Gene3D BRCT domain 662 755 IPR036420 -
Tpr1g3074 977 Pfam twin BRCT domain 670 732 IPR001357 -
Tpr1g3074 977 Pfam twin BRCT domain 190 253 IPR001357 -
Tpr1g3074 977 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Tpr1g3074 977 SUPERFAMILY BRCT domain 186 272 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3074 1 976 Core DNA Replication Machinery Family AT1G77320 50.195 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3074 K10728 - gmx:100804966 1435.24