Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3073 ATGAACAGTAACAAAAGGAGCAGCAAAATGGATTTTAAGGAAATTCTGGATATTTTTGAAGTTGCACATGCTTTGGGTAGTAGTTCTTTTTCGGAGAATGCTGAATATTCCTCAGACCAAGATGTGGAAGACACTGACAATCCGTACTACGGAAACAACTTTGATGCTGAAACAGCTGTAGATTGTACGGATGACTTAGAGAAAATAAATATGAAGGAAACCAGTTCGGATCAACTTATGAGGTACCATTTTCCTGATCGTAGAGTTGCATTTATGTTTTACAATTGCTATGGTCGTTTCCATGGATTTGCCGGTAGAAAAAGTCGAGTTGTTAAGAATACTAATGGCGAAGTTGTTCAACAAACCTTTGTTTGCCATAGAGAAGGTATTAGGAATGCAAATAATGCTTTGTCTCGTAAGAGAGAGCAAAAACCTACTAGTAGGTGTCGTTGTCCAGCAAAACTTCAAGTGCATTTGGACTTGGGTAGTGAACGTTGGTACATAAAGTTGTTTGATGATATTCATAATCATTCGTTCTTGGATGAGAAGTACGAGGGTATGCTACCAGCACACAGGAAGATGAGCAATTACGACAAATACCAAATGAAAACAATGAGGAAAGCTGGCATTCCAACATCAGGTATTTATGGGTTTTTTGCTACACAGGCTGGTGGATATGAAAATTTGGGTTATTCAAGAAGAGAGATGTACAATGAACAATTCAAGCACAGGGGAAGAAAGAGTTCTGATGCAGAGGATGCAATTGATTTCATTAAGGATATGTGTGTTAGGGATGATATGATGTATTGCATACCATTTATATTTATGGGTTTTCTGACGGAAACAGCATTACACCTTACTATTATAAAAAAATGTACAAAAGAACACTTTACACCTTACCATTTTTTGCTTCAGACTTTAAGTGAAATTTTCCGCCACTAA 942 0.3705 MNSNKRSSKMDFKEILDIFEVAHALGSSSFSENAEYSSDQDVEDTDNPYYGNNFDAETAVDCTDDLEKINMKETSSDQLMRYHFPDRRVAFMFYNCYGRFHGFAGRKSRVVKNTNGEVVQQTFVCHREGIRNANNALSRKREQKPTSRCRCPAKLQVHLDLGSERWYIKLFDDIHNHSFLDEKYEGMLPAHRKMSNYDKYQMKTMRKAGIPTSGIYGFFATQAGGYENLGYSRREMYNEQFKHRGRKSSDAEDAIDFIKDMCVRDDMMYCIPFIFMGFLTETALHLTIIKKCTKEHFTPYHFLLQTLSEIFRH* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3073 313 Pfam FAR1 DNA-binding domain 93 179 IPR004330 -
Tpr1g3073 313 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 32 199 - -
Tpr1g3073 313 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 32 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3073 Tpr-Chr1 35231212 35232465 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr1g3073 FAR1 6.4e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3073 - - mtr:MTR_6g022080 310.842