Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3072 ATGGGGAGAGGTAAGATTGAGATCAAGAGGATTGAAAACTCAAGCAATAGACAAGTTACATATTCAAAGAGAAAAAATGGGATTTTAAAGAAAGCTAAAGAAATCACTGTTCTATGTGATGCTCAAGTTTCTCTTATCATCTTTGCTGCTTCTGGAAAAATGCATGACTACATCAGCCCTTCTACCACGTTGATTGATATACTTGAGAGATACCATAAAACATCTGGGAAGAGGCTTTGGGATGCCAAACATGAGAACCTAAACAATGAGATTGAGAGACTCAAGAAAGAGAATGATGGAATGCAAGTTGAGCTCAGGCACTTGAAGGGAGATGATATTAACTCACTAAACTACAAGGAGTTGATGAACTTAGAAGATGCCTTAGAAAATGGTCTCCTCACTATCCGCCAGAAACAGAGGGAATTATACAGGATGGTCAAGAGAAACGGCAAGATATTAGAGGAGGAGAACAGAGAACTTAATTTTATTCTCCAGCAGCAACAACGTATGGAAGGTGGGAGAGAAATGGATAATGATCATTTTGATGAGAGTGGAAGAGATTTCAATTCTCAGATGCCATTTTCCTTTCGTGTTCAACCTATGCAGCCAAATCTTCATGAAAGGATCTAG 630 0.3873 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLIDILERYHKTSGKRLWDAKHENLNNEIERLKKENDGMQVELRHLKGDDINSLNYKELMNLEDALENGLLTIRQKQRELYRMVKRNGKILEEENRELNFILQQQQRMEGGREMDNDHFDESGRDFNSQMPFSFRVQPMQPNLHERI* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3072 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr1g3072 209 Pfam K-box region 82 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr1g3072 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr1g3072 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr1g3072 209 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr1g3072 209 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Tpr1g3072 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr1g3072 209 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Tpr1g3072 209 Coils Coil 77 111 - -
Tpr1g3072 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr1g3072 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr1g3072 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr1g3072 209 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 209 - -
Tpr1g3072 209 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Tpr1g3072 209 Coils Coil 121 141 - -
Tpr1g3072 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3072 Tpr-Chr1 35224993 35229222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3072 1 139 MADS-box Gene Family AT5G20240 68.345 9.35e-66 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr1g3072 K-box 2.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3072 K09264 - gmx:100817554 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3072 1 35224993 35229222 Tpr1g3072 1 35224993 35229222 ECH