Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3070 ATGATCTCCGGCGGAGGAGCCTCCAGTACTGGCCGTACTGTGGTGGTTGGTGTGAAGATGGAATCTAACAGTACTCATCATAGTACAGAGTTACTTACTTGGTCTTTGGTTAATGTTGCTCAACCTGGTGATCTTATTCTTGCTCTTCATGTTCTCAGAAATAATGAAATTGTGAATCAAGATGGGAAATCTTCTCTGTTTTCTCTTGTCAAAGCATTTGATACTGTTCTTTCTGGTTATGAAGGATTCTGCAATTTGAAACAGGTGGATCTGAAGCTAAAAATTTGCCGGGGATCATCGGTGAGGAGAATTTTGGTTAGAGAAGCAAATGAGTATTGTGCAAGTCATGTTATAGTTGGAAAACCTCAAGGTCTTAGTAAAATTAGGCCATCTATTTCTATACATAAGTATTGTGCTAAGAAGTTATCTAAGGATTGTTGGGTTTTTGCTGTTGATAATGGGAAAGTTGTGTTCAAGAGAGATGGATCACCGGCTAATCATTCTGACTTAAAAGGTCGCCAAATTGGGTTGTTCGGTTCGATTCAATGGAAATTCAGTATGAGTTTAAAAGTACTAAATGACGATACACACATAGCGATGTTCCCGGATTCATCTTACGGTCATAGTGACAAGAACTCGTTGGCTATGGTGCCTGTAAAGGTAACTGGTGCTGGTTCTAGCATGAAAACTTTTCATGACAGAGAATCAAATAATTTGAAACCTGGTTGGCCACTACTTGGCAGAACTTCATCGTCGAACAGGAAAATTTCTGAAAGATCGTTGTCTCGTCGGGTTTCTGTGGTCCAATGGGCAATGCAGTTGCCCTCTAGAAACCTTTCCTATAATAAAGATAAATTTTTGGGTCTAGATAGCAAAAGTGGTGCTCTTGTTCCGGTGGATGCCGAAATAGGGACGGTTGCTTCACCTGATCGCAAATCGATAAACGTTCCTAAAGAATTGGAAGGCTTTCATGAGAAATACTCATCTACTTGCAGATTGTTTAACTACCAAGAACTTGTATCAGCAACATCAAATTTCTTGCCTGAAAATTTGATCGGTAAAGGAGGAAGTAGCGAGGTTTATAGAGGCTGCCTTCCTGATGGAAAGGAACTTGCTGTCAAGATCTTGAAGCCTTCTGATGATGTTTTGAAGGAGTTTGTTTTAGAGATAGAAATTATCACTACTTTGAATCACAAAAACATCATTTCCCTCATTGGATTCTGTTTTGAGGATGATAATCTTCTTTTAGTCTATGATTTCTTATCAAGAGGGAGTCTTGAACAAAACCTTCACGGTAATAAGAAAAATCCAATTGAGTTTGGTTGGACTGAGAGATATAAGGTGGCAATGGGTGTTGCCGAGGCTTTGGAATATCTGCATAATAATGGCAACCAACCGGTGATTCATCGTGATGTAAAATCATCAAATGTGTTATTATCTGAGGATTTTGAACCACAGCTCTCTGACTTTGGACTCGCTAAATGGGCATCAACCTCATCATCATATATAACCTGCACTGATGTTTCTGGAACTTTTGGTTACTTGGCTCCTGAATACTTCATGTATGGTAAAGTAAATGATAAGATTGATGTCTATGCATTTGGTGTGGTGCTTCTTGAGCTTCTTTCTGGGAGAAAGCCTATAAGTGGTGATTATCCTAAGGGTCAAGAGAGCCTTGTCATGTGGGCTAGTCCAATTCTAAATAATGGGAAGCTCTCACAATTATTGGATCCTAGTTTGGGTGATAACTATGATCATGAAGAGATGGAAAGGATGGTCTTAGCCGCCACCCTTTGTATCAGACGCGCTCCAGGAGCTAGGCCTCAAATGAGCCTTATCTCAAAGGTCCTTAAAGGTGATGCTGATGTAATAAAGCGGGCAAGGGTAGAGATTAATGCTTTGAGAAAATCAGAGTTGCTTGATGAAGAAGCTTGTCTACCTTCTAACTTACAGTCACACCTTAATCTTGCATTGCTCGATGTGGAGGATGACACACTCTCGTTGTACAGTGTTGACCAAAATGTCTCTTTGGAGGACTACTTGAGAGGCAGGTGGAGCCGTTCATCTAGCTTTGATTGA 2079 0.4031 MISGGGASSTGRTVVVGVKMESNSTHHSTELLTWSLVNVAQPGDLILALHVLRNNEIVNQDGKSSLFSLVKAFDTVLSGYEGFCNLKQVDLKLKICRGSSVRRILVREANEYCASHVIVGKPQGLSKIRPSISIHKYCAKKLSKDCWVFAVDNGKVVFKRDGSPANHSDLKGRQIGLFGSIQWKFSMSLKVLNDDTHIAMFPDSSYGHSDKNSLAMVPVKVTGAGSSMKTFHDRESNNLKPGWPLLGRTSSSNRKISERSLSRRVSVVQWAMQLPSRNLSYNKDKFLGLDSKSGALVPVDAEIGTVASPDRKSINVPKELEGFHEKYSSTCRLFNYQELVSATSNFLPENLIGKGGSSEVYRGCLPDGKELAVKILKPSDDVLKEFVLEIEIITTLNHKNIISLIGFCFEDDNLLLVYDFLSRGSLEQNLHGNKKNPIEFGWTERYKVAMGVAEALEYLHNNGNQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSYITCTDVSGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISGDYPKGQESLVMWASPILNNGKLSQLLDPSLGDNYDHEEMERMVLAATLCIRRAPGARPQMSLISKVLKGDADVIKRARVEINALRKSELLDEEACLPSNLQSHLNLALLDVEDDTLSLYSVDQNVSLEDYLRGRWSRSSSFD* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3070 692 ProSiteProfiles Protein kinase domain profile. 346 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3070 692 PANTHER OS01G0253100 PROTEIN 5 686 IPR045271 GO:0004714|GO:0006468
Tpr1g3070 692 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Tpr1g3070 692 SUPERFAMILY Protein kinase-like (PK-like) 327 616 IPR011009 -
Tpr1g3070 692 Gene3D Phosphorylase Kinase; domain 1 311 420 - -
Tpr1g3070 692 SMART serkin_6 346 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3070 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Tpr1g3070 692 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 5 686 - -
Tpr1g3070 692 Pfam Protein kinase domain 350 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3070 692 Gene3D Transferase(Phosphotransferase) domain 1 421 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3070 Tpr-Chr1 35179228 35183653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3070 333 613 Trihelix Transcription Factor Family AT1G68690 45.804 2.42e-77 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Tpr1g3070 Pkinase 2.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3070 - - aprc:113846853 1040.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3070 1 35179228 35183653 Tpr1g3070 1 35179228 35183653 ECH