Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3069 ATGGATCATCATCAACACTTCCTCCACCATCAAGACCACCGTACACGATTCGCTCCTCCACATCTCCTCCCTCAACCACTTCCTCATCCTCCTCCTCCACCTATCTCTTACCGCACCACCACCCTTCCTCAACCACCTTACAACCCTCCTTTACCTCACCAATCTTCTCAATTCCCTATTTACCATCCAGATCATCATCCCCCTCGCCGTTTCATCATTGAACCCCCTTGGAACCCTAATCCCGAAGATCGATCCTCCAGAATCGATTACCACCGCGAATCGCATCACCACCAACACCAAAACCACCGTCCTCAGCCTTCTTATCCACCACCTATCCGTTACGAACATGAAAGATTGAACACCGAAGGAAACCCTAGGGAATCCTTCCTCTATCGCCAACACGTAACTGCCGCCGCATCCGCCTCCACATCGAATCTGGCTTATCATGAATCCGATGACAGAATCGATAACAGAAGGTGGTTGAATGATAGAAAACTACACAATTCTTCACCTCCTCATTCACCTTCTTTTGAATTGGTGAATGATGGAATAACTGCACGAGATTATCATAGTTCTGAAACCGTTAGGTTTAATGGTGGTAGCAATAGTAGTAGATCCAATAGTAGAGAGTGTAATCACAATCACGGTCGAGAATTCAGTCGAACACCACCCAAGAAACAGATTCAAAAGAAGAGTGCTCTTCTTAGAATCCAAACGGTAAAACCTAATCGGAGGAACCGTGATGTTGAACAACGATATGTTCCTGATTCTAAAGTTAATTTCTTCAAGGGTAATAGTAAAGATCAACGTGGAGGTTATACAAAGGGTGGTGGTGAAGATAGAAAAAAAGAAAACCCTGTTGAAGAATTTGACGTTTCTTGTGAATCAAGTGTTCTTGTGGCTAAGCCGCGTATTGTCACTTCCGGTGCAGTTTCTGGTAAACTGTCTTCTGTTGTTAGAACTGCGAAGGAAGGCGATGCTTCAGAGAAGAATGTAGGTGATGCTTGTGATCCTCATGAGAAAAATGGGGGGGAAGTTTCTGTTGAAGCTAGTGGTACTAGTATTCTTAAATTGGCCTCTAAGATTGTGAAGAAGAAGAAAACTATTAAAAGAATGGTGAAGAAAGGTTCTGTAAAATGTACTAATCCGGGTGTGTCGGCTTCACCTTCGTTGGCCAATGAAGTTGGTGGAATTGTGGAAGAAAATAGTGTGGCACGGAGCTCGTCCAATGCTGCATCTGGAACTGTTGAAACTGAAACTTGTTTGGAGGAGAAAATCAATGGTGTTGATAAGGTGGCTGCGCCAGAAGATGAAGGTGATGCATTGGATGAAGATATAAAGGTGGGTTTGTCCTTGCTGAGTTCGAAGCCAGAAAGCAGGTCACAAGAAGGTAAGAACAGTGAAGATTCTGATATTGGGAAAGAACCCAGGTTTGAAAAAGGTGGAAGTATTTCAGATACTCCATCTTGTGTTTCTAGTATTTTAGGTAAAAGTAGTTGTTCTGATTGTTTAGATGTGTGCAATTCTGTTCATGACTTGCTTAGCATGACAAATATTGACAAGGCTACTAAGTCATTAAATGGAAGTACTTCTGAAATCAATCACTTGGATTGTGGGAACAAGACATTATGTCAGAGTGAAGTATCTCTATCACCTGCGGAAAATATAGATGTAGGATGCTCAGGGAATAGGAATCTTGTAGACGTAGGGAATCAAATGAATTACAATGCCATTTCCGCAGATATCGTAAGTACACAGAATTCTGCTGATGATAGTGTTTACGGCTTCAATTCCAATGATCTTACAAGTTCAGAAGAGAAAACTACTGTTAATGACAGTGGGAATAATGACATTGATGGAGAGGCCTATTGTGAAAAGATTGCTCCTCTGATCAATCAATATTCTACATCTGAAGAAAATTCAGATACAGCCATCCCTTTGTCAAGTAGTAGAATGGTTGCTTTTTCAAGTTTAGGAGATACTAGGATTCAGGATGGTCAAGATAGCCTACAACATATCAGTGTACTGAAGCAGGGGTCTGATGATGGATTGTCTAGTTTGGAAGAGGGTATCATTGTTCACCAATTTGATATCATTAAAGATGCTGAAAAGCAAGTGTCCCCTGGTGAAGTTCCCTTATCTGCTGAGAATTGTGACATAGATAAAACATTTCCGAATTCTAATATTTCACTTGGATTTGATGTAAGGGATACAAGTAAGATAGAAAAGAGAGATGTTAAGACTCGTTTAAATTTTTTGAGTTTGAATTTGGATGATATATCTCTTCCTCCAGTTAACCATTCAAATGATACTGATAGAGGCTCAACAATTTTATTGAAGGATCCATGTGCTTCAGAAGTCTTGGATGATTCTATTCAAAGCCTAGATTTTTACTCGCTATCCAACCAGGTTGGGGACACTGCTTTACATGGGAAAAGGGCATTTTCAGAGGCTGAGTTTTGTGTTGCAAATAATGACAATGATGATGAAAATGTTTCTAAGAGGAAAAAAGTCACTTCTAGTGACCCAAATTTAACTCAATTTCAAACTGAATTTAGTGCTTCCATTGTGGCTACCGCATCTACTGCAGAAGTTCCTATCAGTTTCAGTGATAGACAAGAACATAAGAAAGATGACATTGCATTGTCAAGCATGGGTATGGATATTCAGTCTAAGGCCCAGTCTATGCCTTATTCGGGTGATATTGCTAAATCGTCTGACTGTAGTTTCACTGGAGGATCATTTGAGTCTACAGATGTAAATAGGGAAACCAAGAGTTCTGAGCATTTGGAATTGCAAGTCTCTACACAATGTGAGGACTTGGCAATTCCAAATGTTCAGTTTTCAGAGCAGAAAGATAATGTTACTCCAATCGTGGTTATAAGTAATACTCAAACTGACATTTTGGTTATTGGAAATATCATGGGAGAAAAGACAGATTCACAGGTTGCTGAAAACAATTGCCATTATGGAGATGTTGTGCAAAGGTCTCCAACGGCTGATATGCTCTCTAATGATCTCAATATGAAGGGTGATCTACTTTCTCAGGAGAACCGTATGTCCTGCCCTGCTGTTGGTATCAGTAACTCAAATAATGAATTACCCGACGGTTTGCCTGATGCTTTATCCGATATGTATTCTCAAGGGATGACATCTGAATTACCAGATAGAATGATTACTGAAGCTACAGCAATGGATATTGATGAAAACATTCCTGGGAATGAAGAAAATATAGATTTTGTATCTATGGTCAAACATGGTTCTGACTCGGATACTTCATCAAAACAGCATACTGAAAAAACTACGAAGTCAGATCATGCAATTGAATGTAGTAACCAAATCTCACGGAATATAATCCCAGAACCAACCCAAGTTTTTTCCAAAGTTACACCATTTGGTCTAAATTCATCATGTTTTGGATTAAATGGAAGCAAAAATCAGCCAGGTGGTGTCATCCTTAAAGCTTCCAAGGGTCCTTCTTTTCCCTTTCCAAAGTCAAAGTCAAAGACTCCCGCCTCTTCAGTCCGTGCATCAAAATCTCGAACGTGGCGTCGGACAGATAATAATCCTCCCGCCTCTCTTCCTAGAGTCAATCTTTCAGCAGAAATAGTTCCTTCCAAAAGGCCAATTCTCCAAAGGAAAAATAACTTTCAAAATACTTCTTACATTCGTAAAGGTAACAGTCTTGTTAGGAATCCTAGTCCAGTTTCTGCTATACCTCAAATATTGTCTACCAGTTCTGTGAGACCTACTCCAGTTTCTGCTATACCTCAAATCTCCTTTATCAATCCGCTACCTTTGGGCTTAGGGGAAATACATAAGGGTACTAAACCTGAAAGCAGGGCTGATTTAACAGATCAGCCAATCTACTCAAAAACAAAAGTATCAAATACTTCTCTACCCATTGATATTAAATCAGGGGAAAACATATCTTCCCCATTGTTAGAACCTCCTTCCAGTGGCTTCTGTGAAAATGTATCTGGTCCTAGGAAGTTCATTGAAACTAATGATGCATCAGCCTCCTCTGAAGGTGTACTAAAACAATATGAAACTCCTGAAAATCAAACTGGTCCATCTAGCAATGGGGAATGTCAAGGTGAAGCAAATGATGGAAATATTTCTTCTTTGAACTCAAAAAGAATAGTTTATATAAAGCCGAAAACAAATCAATTGGTTGCAACTTCGAGTTCTTGTGATACTATTGTCTCTACTGATGACAAAGGCCAAACAGCCATCTCTGATAGCTATTACAAGAGGAAAAAAAATCAATTGGTCAGGTCTACATTTGAAAACCATGTCAACCAGACATTTGCAATGCCCAATAACATTGTAAATTCTGATGGTCAAGGGGACAGTAAAGTACTTTGCAAGAGAAGGTCTACCAAGAGGCGGTCACATAAGGGTGCTGGGATTTCGAGAAAATCTTCCAGAGCATCATTAGTGTGGACACTTGGTAGCAAAAATTCTTCTGGAAATGACAGGAACTTCTGGCACTATCAAAAGGTTTTACCGCACTTGGTTCCATGGAAAAGAACGACATATTTAAGAAGCTTCATTAACAATTCTGCCTCAAGCTTCAATAGTGGTTCCTTATCTCCAGTCGGTAAGAAATTGCTTCAGTTGAGAAAGAGGGATACTGTTTACACCAGGTCAACCCGTGGGTTTTCTCTTTGGAAATCCAAAGTTTTAGGTGTTGGTGGGTCTAGTTTAAAATGGTCAAAATCCATTGAAAAGCACTCGAAGAAAGCCAATGAGGAAGCCACACTTGCTGTTGCTGCTGTTGAGAGGAAGAAGAGAGAGAAGAAAGATCCAGCTTGTATTGGTCCTCAGACAAAGAGAGAACGTATATTTCGTGTTGGTTCAGTTCGCTACAGAATGGATCCTTCCAGGCGGACACTTCAGAGGATTTCAGATGATGAATCCCTGTCCTCTGCCTCAATCAATTCAGGTTTGGCGTCCAAAAAAGGTTACATTCCAAGGAGATTAGTGATTGGAAATGATGAATATGTCCGAATTGGCAATGGGAACCAACTTATCAGAGACCCAAAGAAACGAACTAGAAAATTGGCAAATGAAAAAGTTAGATGGAGCTTGCACACTGCCAGGCAGCGGTTGGCTCGTAAGCAGAAGTACTGTCAGTTTTTCACAAGATTTGGGAAATGTAACAAGGATGATGGAGGGAAGTGTCCTTACATTCATGATCCCTCAAAAATTGCTGTCTGTACTAAGTTCCTGAAGGGTTTATGTTCTACTCCAAACTGCAAATTGACTCATAAGGTTATTCCGGAGAGAATGCCTGATTGTTCATACTTTTTGCAAGGCCTATGCTCAAACGAAAGTTGTCCATATAGACATGTCAATGTGAATCCTAAGGCATCTATTTGTGAAGGTTTTCTTAAGGGTTATTGTGCTGATGGGAATGAGTGTCGAAAGAAGCACAGCTACGTCTGTCCAAGTTTTGAAGCAACAGGAACCTGTACTCAAGGAATCAAATGCAAGCTTCACCACCCTAAAAAACAAAGCAAGGGAAAGAAAAGAAAGAGATCCGATGATCAGAACAGCGGTAGAGGACGCTACTTTGGTTCTATTCCTGCTGATGTTTCTGAACCTTGGATTATGGTGGCTCCCAAATTTCCTCAACAGGATGAGGAACATGAGAGTGAACTAACTGACTACATCAGTCTTGATGCATATGAAGAAGAGGAAGATGCGGCTGACCAATCATTTGAGCTATCAACATTTTGTGACAATGATACCACGGATCTTCAGTTGGATACTTCTGATGAACTCATCAATCCTGTTTCTATAATAATGAAATTTGGTTTGCAATCTCAGTCTAGAAGCCTTCAAGCTTAG 5856 0.4032 MDHHQHFLHHQDHRTRFAPPHLLPQPLPHPPPPPISYRTTTLPQPPYNPPLPHQSSQFPIYHPDHHPPRRFIIEPPWNPNPEDRSSRIDYHRESHHHQHQNHRPQPSYPPPIRYEHERLNTEGNPRESFLYRQHVTAAASASTSNLAYHESDDRIDNRRWLNDRKLHNSSPPHSPSFELVNDGITARDYHSSETVRFNGGSNSSRSNSRECNHNHGREFSRTPPKKQIQKKSALLRIQTVKPNRRNRDVEQRYVPDSKVNFFKGNSKDQRGGYTKGGGEDRKKENPVEEFDVSCESSVLVAKPRIVTSGAVSGKLSSVVRTAKEGDASEKNVGDACDPHEKNGGEVSVEASGTSILKLASKIVKKKKTIKRMVKKGSVKCTNPGVSASPSLANEVGGIVEENSVARSSSNAASGTVETETCLEEKINGVDKVAAPEDEGDALDEDIKVGLSLLSSKPESRSQEGKNSEDSDIGKEPRFEKGGSISDTPSCVSSILGKSSCSDCLDVCNSVHDLLSMTNIDKATKSLNGSTSEINHLDCGNKTLCQSEVSLSPAENIDVGCSGNRNLVDVGNQMNYNAISADIVSTQNSADDSVYGFNSNDLTSSEEKTTVNDSGNNDIDGEAYCEKIAPLINQYSTSEENSDTAIPLSSSRMVAFSSLGDTRIQDGQDSLQHISVLKQGSDDGLSSLEEGIIVHQFDIIKDAEKQVSPGEVPLSAENCDIDKTFPNSNISLGFDVRDTSKIEKRDVKTRLNFLSLNLDDISLPPVNHSNDTDRGSTILLKDPCASEVLDDSIQSLDFYSLSNQVGDTALHGKRAFSEAEFCVANNDNDDENVSKRKKVTSSDPNLTQFQTEFSASIVATASTAEVPISFSDRQEHKKDDIALSSMGMDIQSKAQSMPYSGDIAKSSDCSFTGGSFESTDVNRETKSSEHLELQVSTQCEDLAIPNVQFSEQKDNVTPIVVISNTQTDILVIGNIMGEKTDSQVAENNCHYGDVVQRSPTADMLSNDLNMKGDLLSQENRMSCPAVGISNSNNELPDGLPDALSDMYSQGMTSELPDRMITEATAMDIDENIPGNEENIDFVSMVKHGSDSDTSSKQHTEKTTKSDHAIECSNQISRNIIPEPTQVFSKVTPFGLNSSCFGLNGSKNQPGGVILKASKGPSFPFPKSKSKTPASSVRASKSRTWRRTDNNPPASLPRVNLSAEIVPSKRPILQRKNNFQNTSYIRKGNSLVRNPSPVSAIPQILSTSSVRPTPVSAIPQISFINPLPLGLGEIHKGTKPESRADLTDQPIYSKTKVSNTSLPIDIKSGENISSPLLEPPSSGFCENVSGPRKFIETNDASASSEGVLKQYETPENQTGPSSNGECQGEANDGNISSLNSKRIVYIKPKTNQLVATSSSCDTIVSTDDKGQTAISDSYYKRKKNQLVRSTFENHVNQTFAMPNNIVNSDGQGDSKVLCKRRSTKRRSHKGAGISRKSSRASLVWTLGSKNSSGNDRNFWHYQKVLPHLVPWKRTTYLRSFINNSASSFNSGSLSPVGKKLLQLRKRDTVYTRSTRGFSLWKSKVLGVGGSSLKWSKSIEKHSKKANEEATLAVAAVERKKREKKDPACIGPQTKRERIFRVGSVRYRMDPSRRTLQRISDDESLSSASINSGLASKKGYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDDGGKCPYIHDPSKIAVCTKFLKGLCSTPNCKLTHKVIPERMPDCSYFLQGLCSNESCPYRHVNVNPKASICEGFLKGYCADGNECRKKHSYVCPSFEATGTCTQGIKCKLHHPKKQSKGKKRKRSDDQNSGRGRYFGSIPADVSEPWIMVAPKFPQQDEEHESELTDYISLDAYEEEEDAADQSFELSTFCDNDTTDLQLDTSDELINPVSIIMKFGLQSQSRSLQA* 1952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3069 1951 MobiDBLite consensus disorder prediction 452 484 - -
Tpr1g3069 1951 MobiDBLite consensus disorder prediction 461 481 - -
Tpr1g3069 1951 Coils Coil 1942 1951 - -
Tpr1g3069 1951 ProSiteProfiles Zinc finger C3H1-type profile. 1762 1788 IPR000571 GO:0046872
Tpr1g3069 1951 MobiDBLite consensus disorder prediction 1162 1191 - -
Tpr1g3069 1951 Gene3D - 1789 1852 - -
Tpr1g3069 1951 MobiDBLite consensus disorder prediction 1090 1106 - -
Tpr1g3069 1951 MobiDBLite consensus disorder prediction 195 209 - -
Tpr1g3069 1951 MobiDBLite consensus disorder prediction 1085 1108 - -
Tpr1g3069 1951 ProSiteProfiles Zinc finger C3H1-type profile. 1789 1816 IPR000571 GO:0046872
Tpr1g3069 1951 MobiDBLite consensus disorder prediction 273 288 - -
Tpr1g3069 1951 SMART c3hfinal6 1736 1760 IPR000571 GO:0046872
Tpr1g3069 1951 SMART c3hfinal6 1706 1735 IPR000571 GO:0046872
Tpr1g3069 1951 SMART c3hfinal6 1762 1787 IPR000571 GO:0046872
Tpr1g3069 1951 SMART c3hfinal6 1816 1838 IPR000571 GO:0046872
Tpr1g3069 1951 SMART c3hfinal6 1789 1815 IPR000571 GO:0046872
Tpr1g3069 1951 MobiDBLite consensus disorder prediction 195 228 - -
Tpr1g3069 1951 MobiDBLite consensus disorder prediction 1350 1371 - -
Tpr1g3069 1951 MobiDBLite consensus disorder prediction 210 225 - -
Tpr1g3069 1951 ProSiteProfiles Zinc finger C3H1-type profile. 1706 1736 IPR000571 GO:0046872
Tpr1g3069 1951 MobiDBLite consensus disorder prediction 1166 1191 - -
Tpr1g3069 1951 MobiDBLite consensus disorder prediction 1837 1859 - -
Tpr1g3069 1951 Gene3D - 1733 1788 - -
Tpr1g3069 1951 MobiDBLite consensus disorder prediction 266 288 - -
Tpr1g3069 1951 PANTHER CCCH ZINGC FINGER 281 1937 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3069 Tpr-Chr1 35165248 35174801 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3069 1712 1842 C2H2 Transcription Factor Family AT2G32930 31.618 1.51e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr1g3069 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3069 - - mtr:MTR_1g029710 2622.42