Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3063 ATGGCAACATCTAAAGTCAATAAGAAAGTGTTTGATTCAGAAGAAGCTTTAACAACGGTTAAGGATCTAAGAACAACGTTTGACTCTGGTAAAACTCGAAGCTACGAATGGAGAATTTCTCAATTGAAAGCACTTTTGGAGTTAACTGAACAGAAGGAGCAAGAGATTGTTAAAGCTCTCTACTCCGACTTATCCAAATCTGAAGCTGAATCTTTCATCCAAGAGATTTCTATGTTGAAAAACTCATGTAAAACTGCAATCAAGGAATTGAAGCATTGGATGGCTCCAGAAAAGGTCAAAACATCACTCACAACTTTTCCTTCTTCGGCTGAAATAGTATCTGAACCACTTGGAGTTGTTTTGGTCATCTCTGCATGGAACTATCCATTTTTGCTATCACTTGATCCAGTTATTGGAGCTATTGCAGCGGGTAATGCCGTGGTTTTAAAACCATCAGAGCTTGCTCCGGCCACATCATCATTGCTGACAAAACTATTAGCAGAATACATGGATAACTCATCTATAAGAGTTGTTGAGGGAGCAGTTGATGAAACATCTGCATTACTGCAACAAAAGTGGGACAAAATTTTCTACACAGGTAATGGAAAAGTGGCACGCATAGTGATGGCTGCTGCTGCTAAGAACCTTACACCAGTTGTGCTGGAGCTTGGAGGAAAATCACCAGTTATTGTTGATTCAAATTCAAATATCAACTTACAGGTAGCAACTAGAAGGATAATTGCTGGAAAATGGGGTTGCAATAATGGACAAGCTTGTATTTCTCCAGATTATATTATAACTACAAAAGACTATGCTCCTAAGTTGGTGGATTCTCTGAAGACTGAATTGGAGAGTTTTTATGGAAAGAATCCATTGGAATCAAAAGATTTGTCCCGTATTGTAAACTCGAACCACTTTGCTCGCTTGTCAAAGCTTTTGGATGATGATAAAGTTTCTGGTAAGACTGTTTATGGAGGTGAAAAGGATGAAAGCAAATTGAGGATTAGCCCTACTATTCTATTGGATGTTCCGCGAGATTCTCTGATAATGAATGAGGAGATATTCGGTCCATTACTTCCCATCATCACGGTCGATAAACTAGAAGAAAGCTTTGATGTGATAAACTCAGGACCAAAGCCTCTTGCTGCATATTTATTTACAAACAATAAGAAACTCAAGGAGCAGTTTGTTAAGACTATTTCTGCTGGTGGTTTGGTCATCAATGACACTACTCTACATCTTGCAGTGCATACTTTGCCTTTTGGAGGAGTAGGAGACAGTGGAGTTGGTGCATATCATGGAAAATTCTCATTTGATGCATTTAGCCACAAAAAAGCAGTTCTATATCGCAGTTTTTTTGGTGATGCTTCTATAAGGTATCCACCATATACTAAGACAAAGATGAGATTTTTGAAGGCTCTCATGACTGGTGGCTTACTAGCTATAATTAATGCCATATTTGGAAAGTCCTAG 1473 0.3849 MATSKVNKKVFDSEEALTTVKDLRTTFDSGKTRSYEWRISQLKALLELTEQKEQEIVKALYSDLSKSEAESFIQEISMLKNSCKTAIKELKHWMAPEKVKTSLTTFPSSAEIVSEPLGVVLVISAWNYPFLLSLDPVIGAIAAGNAVVLKPSELAPATSSLLTKLLAEYMDNSSIRVVEGAVDETSALLQQKWDKIFYTGNGKVARIVMAAAAKNLTPVVLELGGKSPVIVDSNSNINLQVATRRIIAGKWGCNNGQACISPDYIITTKDYAPKLVDSLKTELESFYGKNPLESKDLSRIVNSNHFARLSKLLDDDKVSGKTVYGGEKDESKLRISPTILLDVPRDSLIMNEEIFGPLLPIITVDKLEESFDVINSGPKPLAAYLFTNNKKLKEQFVKTISAGGLVINDTTLHLAVHTLPFGGVGDSGVGAYHGKFSFDAFSHKKAVLYRSFFGDASIRYPPYTKTKMRFLKALMTGGLLAIINAIFGKS* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3063 490 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 221 228 IPR029510 GO:0016491
Tpr1g3063 490 PIRSF ALDH 3 484 IPR012394 GO:0006081
Tpr1g3063 490 PANTHER ALDEHYDE DEHYDROGENASE 6 490 - -
Tpr1g3063 490 Pfam Aldehyde dehydrogenase family 12 447 IPR015590 GO:0016491
Tpr1g3063 490 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 445 IPR016162 GO:0016491
Tpr1g3063 490 PANTHER ALDEHYDE DEHYDROGENASE 6 490 IPR012394 GO:0006081
Tpr1g3063 490 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 225 427 IPR016163 GO:0016620
Tpr1g3063 490 SUPERFAMILY ALDH-like 19 462 IPR016161 GO:0016491
Tpr1g3063 490 CDD ALDH_F3FHI 19 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3063 Tpr-Chr1 35097746 35108002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3063 11 490 Aldehyde Dehydrogenase Gene Family AT4G34240 68.542 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3063 K00128 - gmx:100816594 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3063 1 35097746 35108002 Tpr1g3063 1 35097746 35108002 ECH