Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3062 ATGGGAGATTCCAAGGTAGAAACAATTTCCCGATTAGCTCAATGGAAAATCGACAACTTCGGACCTTGTTCTTACAAGAAATCCGACCCTTTCAAACTCGGTATTTGGAATTGGTATTTGTCAATAGAGAGAAACAGGTATCTATATATACATCTATTTCCTGAACCTTCAAGACTTTCTAAGGAACAACCTCCAATTGCTCGCTTCATTATTCGTGTTTCCAATACTGCTTCATCTTCTTCCTCCTCCCGTAAATTTTACATTTCCCCTGTTCATGAAAGGGTGCTTAGAACATGTGACGACTTTGTCTGGCCTGTGGATACTACATTCCTTGGTCGCTTGATTATTGATGTTGAATTTCTTGACCTGAAGATCCATCCTCTGAATGGTGGAGAAGCCAGTTCTATATGGCCATCTGATGGAAAACTGCAATCTGTTGCAACTCCAAACACTCTCCGATGCCTCTCTCGCATGCTTGACGAAGCTATACACGCTGACCTCACCATTATAACAGCAGATGGTACACTCAAGGCACATAAAGCAGTCTTGTCCGCAACTTCTCCTGCATTCCTGGCCTCATATCGTGACAGCAGCGAAGAGAAAGAGTCGTCTACAATCCACATGGAAGAAATGTCACAAGAATCCTGCACAGCCCTTCTAAGTTACATGTACGGCACAATAAAACCCGGAGATTTCTGGAAACACAGGCTTTCATTGCTCGGAGCAGCCAATAAATACGACATAGGCGATCTCAAAGATGCTTGTGAGGAAAGCCTACTCGAAGATCTTAACTCCGGAAATGTTCTTGAGAGGCTGAATGAGGCTTGGTTGTACCAGCTGCAAAAGTTAAAGAAAGGATGTTTCACATTCTTATTTGATTTCGGTAAGATATATGATGTTAGAGAAGAAATAAATACTTTTTTTCGTCATGCAGATAGGGATCTAATGCTGGAGATGTTTCAAGAAGTGCTTACAATTTGGAAATAG 987 0.4164 MGDSKVETISRLAQWKIDNFGPCSYKKSDPFKLGIWNWYLSIERNRYLYIHLFPEPSRLSKEQPPIARFIIRVSNTASSSSSSRKFYISPVHERVLRTCDDFVWPVDTTFLGRLIIDVEFLDLKIHPLNGGEASSIWPSDGKLQSVATPNTLRCLSRMLDEAIHADLTIITADGTLKAHKAVLSATSPAFLASYRDSSEEKESSTIHMEEMSQESCTALLSYMYGTIKPGDFWKHRLSLLGAANKYDIGDLKDACEESLLEDLNSGNVLERLNEAWLYQLQKLKKGCFTFLFDFGKIYDVREEINTFFRHADRDLMLEMFQEVLTIWK* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3062 328 ProSiteProfiles BTB domain profile. 165 224 IPR000210 GO:0005515
Tpr1g3062 328 PANTHER OS08G0495500 PROTEIN-RELATED 1 328 IPR044714 -
Tpr1g3062 328 SUPERFAMILY POZ domain 148 261 IPR011333 -
Tpr1g3062 328 Gene3D Potassium Channel Kv1.1; Chain A 139 292 IPR011333 -
Tpr1g3062 328 PANTHER OS08G0103600 PROTEIN 1 328 - -
Tpr1g3062 328 Pfam BTB/POZ domain 158 261 IPR000210 GO:0005515
Tpr1g3062 328 SMART BTB_4 165 263 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3062 Tpr-Chr1 35092636 35096086 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tpr1g3062 BTB 2.4e-18 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3062 K10523 - gmx:100775687 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3062 1 35092636 35096086 Tpr1g3062 1 35092636 35096086 ECH