Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3054 ATGAAAAATCCATTTGAATTTCCTTCCGTCAGCGGTTCCATAAGAATGCAATTTCGATCCTCATTCAAGTGGGAATTGGTCGTTACTTCCTCAATCTCTAGGGGTAGAAATGTCCTGAATTTTCCCAGGGAATACACCAGAAATTGTTTAATGAACTCTGATAGGAAGATCTATCTTATTGATGTTGCATCTGGAAGAGTTTACAATTCAAAGATTTTTACTTCAGGTCAAAATAAAGAAACCAGATTTGTTTACTCTTGTTGGAAGAAATTCGTGACTGACAACAAATTGAAGTTCAGAGATAAGGTTATCTTCAATGCCACCACTGGTGATAATGTTATCGAAGTCCAGATCCTGCGTCGTCGTCGTCGTTCACGTTAG 381 0.3806 MKNPFEFPSVSGSIRMQFRSSFKWELVVTSSISRGRNVLNFPREYTRNCLMNSDRKIYLIDVASGRVYNSKIFTSGQNKETRFVYSCWKKFVTDNKLKFRDKVIFNATTGDNVIEVQILRRRRRSR* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3054 126 Pfam B3 DNA binding domain 28 121 IPR003340 GO:0003677
Tpr1g3054 126 Gene3D - 14 123 IPR015300 -
Tpr1g3054 126 SUPERFAMILY DNA-binding pseudobarrel domain 25 121 IPR015300 -
Tpr1g3054 126 ProSiteProfiles B3 DNA-binding domain profile. 24 122 IPR003340 GO:0003677
Tpr1g3054 126 SMART B3_2 22 122 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3054 Tpr-Chr1 34996737 34997640 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g3054 B3 1.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3054 - K03097 mtr:MTR_6g087720 50.447