Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3044 ATGTCTCACAATCGCATCACCACCGATTCCCCTCTCTCTCGTCGCATAGTTCGTTCTTTCCTCCATTTCCTCAACCATGTTGAACCTAGCCATGGTGTTGATGCTGAAGGGATTGAAGTTGCTAAGGAGTGTTTGGTAGAGGCTTTTAAGATTAACAGTTCATCTTCTGGAACTGGTGATCCTGATTCATTGATTGACATTTTCAAGTCATTTGATTCAAACAAGCACTGTGATAGAAGTAAGTCAGATTCTGTGAAAGCTTCAAGTTCTGCACCGAGTGCTGCTGATGATGCGTCGAAATCCATGGATGAAGATTGGATGCTGGACCCTCACATTTCCGTGTCTAAAGATGAACTGTGTGGACAATTCTTTGCTGTTCTGGAGAAAAAACGGTATTTCAGGACCAATATTGATGGAGGTGATGACATTGTGCGATTGGAGAAAGCATCTCGCTCATTCGATGATGGTTTTATGGAGATGGAAAGATCTGGGTGTCGGCAGTTTAATTTGAAGAATTTGTCTGAATCACTAAAATCACTAGGTAACAAGGCAATGCAATCCAAGCGATACTATGATGCAATTGAGTTGTATACTTGTGCAATTGCGATATATGAAAAGAGTGCTATTTACTACTGCAACAGGGCAGCTGCTTATACTCAAATTAACAAATATACATTGGCAATCCAAGATTGTCTTAGATCTATCGAGATTGATCCGAACTACAGCAAGGGATACAGTCGTCTGGGATTTGCTTATTATTCACAAGGAAACTACAGAGATGCTATTGATAAAGGGTTTAAAAAAGCCTTGCAATTGGATCCCAACAACGAGTCTGTTAAAGAAAATATGAGGGCAGCTGAGGATAAATTGATGGAAGAGGGACATCATGCAGATCACAATCAGAATTCAAGATCATCTCAAGAATTCCAAAACCATTCTGCAAGGGGATCAAGAAGCCATGCAGCTCCGCCTCCATTTGCCTCAATGCCATTTAACCCCAGCAACCTCGCAAGCATGTTCACGGCGGCCACAAATGCGTATCAGAGGTCACATCCTCAGGAAAGTCAAGAAGATGGCAATAGTAGTGAAGCTGACGAACCCGGAATTCAATTTGGGGGCCATGTTGATTTAAACTCTGTTCAAATCCCTCAGGAACTAAGTGGTGTCCTTCAAAATGTGATGGGGATATTTTCAGGGAATGCACCTCCTGGCCAACCACATGATCAAATGAATGATAGAACGCCACCAAACTAA 1254 0.4211 MSHNRITTDSPLSRRIVRSFLHFLNHVEPSHGVDAEGIEVAKECLVEAFKINSSSSGTGDPDSLIDIFKSFDSNKHCDRSKSDSVKASSSAPSAADDASKSMDEDWMLDPHISVSKDELCGQFFAVLEKKRYFRTNIDGGDDIVRLEKASRSFDDGFMEMERSGCRQFNLKNLSESLKSLGNKAMQSKRYYDAIELYTCAIAIYEKSAIYYCNRAAAYTQINKYTLAIQDCLRSIEIDPNYSKGYSRLGFAYYSQGNYRDAIDKGFKKALQLDPNNESVKENMRAAEDKLMEEGHHADHNQNSRSSQEFQNHSARGSRSHAAPPPFASMPFNPSNLASMFTAATNAYQRSHPQESQEDGNSSEADEPGIQFGGHVDLNSVQIPQELSGVLQNVMGIFSGNAPPGQPHDQMNDRTPPN* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3044 417 MobiDBLite consensus disorder prediction 347 374 - -
Tpr1g3044 417 MobiDBLite consensus disorder prediction 294 333 - -
Tpr1g3044 417 MobiDBLite consensus disorder prediction 397 417 - -
Tpr1g3044 417 MobiDBLite consensus disorder prediction 303 317 - -
Tpr1g3044 417 Pfam Tetratricopeptide repeat 243 276 IPR013105 -
Tpr1g3044 417 ProSiteProfiles TPR repeat profile. 242 276 IPR019734 GO:0005515
Tpr1g3044 417 SMART tpr_5 174 207 IPR019734 GO:0005515
Tpr1g3044 417 SMART tpr_5 208 241 IPR019734 GO:0005515
Tpr1g3044 417 SMART tpr_5 242 276 IPR019734 GO:0005515
Tpr1g3044 417 SUPERFAMILY TPR-like 174 287 IPR011990 GO:0005515
Tpr1g3044 417 ProSiteProfiles TPR repeat profile. 208 241 IPR019734 GO:0005515
Tpr1g3044 417 PANTHER LD24721P 9 414 - -
Tpr1g3044 417 Gene3D Tetratricopeptide repeat domain 169 324 IPR011990 GO:0005515
Tpr1g3044 417 Gene3D Immunoglobulin FC, subunit C 3 74 - -
Tpr1g3044 417 Pfam Tetratricopeptide repeat 209 241 IPR001440 GO:0005515
Tpr1g3044 417 MobiDBLite consensus disorder prediction 76 101 - -
Tpr1g3044 417 PANTHER LD24721P 9 414 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3044 173 272 U-box Gene Family AT3G07370 30.000 4.52e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3044 K16365 - gmx:100799770 522.316