Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3012 ATGGAGGACATGGAACGCAAATTTGAGCAAAGGTTTGCTAGAATGGAAGCTCAAAATGCAGAAACCGCCAAGAAAATTTTCGGAATCTTGGAGAGTTTAATTCAGAAGGTCAACTCGATCGAGAAGCCTCCTGCTGATAGTGCTGTTATCGGACTCGGCACAGTCACGGAGGAGAAGCCGCTCGGCACAGTCACAGAGGAGAAGCCGCCTTCCCATGTCGGCATTGAGGCCAACTTGAATGGCCTAGAACTGACGGAACTGAAAAAACTTGATGTGAAGAGAAGAAAAACAATATCTGAGTTGTTGATATCTACTTCAAAGGCTGAGAGAAAAGAAACAAGGTTAAAAGTACGTCAAGACTCATTAAGACTTGGAAGTGTCGACTTTATCAGTGCTGGAACTGTTTTATCCGAGGTCTGGAAGGATGGTCATGTGTTCAGCGATCTGAATGCGAAACAGGAAAAACTACAAGAAGAAAGAGAGGCAATTGAACAACAGTTACTCAAGATAACACCATCTGGTGCGACTCGGAACAATTTTCAGGAACAAGAAGCTGTTTTGGAACAGAGGGACCGCTATGAACTAGAGAAGGAAAGACTAATCCGTGAAATGAAACGCATACGGGATGAAGATGGTTCACGGTTCAATGGCTTTCAGATTCTAAAAGACCGTTATGTCCTTCTAAATCTTCTCGGAAAGGGAGGATACGGCGAGGTGTACAAGGCTTTTGACTTGGCGGAACATAGATACGTTGCCTGCAAGATTCATGGTGTAAATGTTCAATGGAGTGAAGCGATCAAGCAAAATTACATCAAGCACACAAATCGGGAGTGTCGTATTCACAAGAGCTTGGTCCATGATCACATTGTTCGTATATGGGAGATCTTTCTGATTGATAAAAATACAGGCTGCAGTGTTCAAGAGTATTGTATGGGGAAAGATCTTGATGCTCTTCTTAAAGCATCTCCTATATTGCCTGAGAGGGAGGCAAGAGTCATTTTGGTTCAGATTTTCCACGCTCTTGTTTACTTGAACACAAGAACACAGAAGATCATCCATTATGATTTAAAGCCCGGAAATGTTTTGTTTGATGAGTTTGGAGTTGCAAAATTAACTGATTTTGGTCTTAGCAAGATAGTAGAGAATGATGTGGGATCCCAGGGTATGGAGCTTACGTCCCACGGGGCTGGAACTTATTGGTATTTGCCGCCTGAATGCTTTGACTTTAGAAAAACACCTCTTATATCATCCAAGGTTGATGTCTGGTCTGCTGGTATATTGTTTTATCAAATGCTCTTTGGCAAACGTCCTTTTGGACATGGCCAAACACAAGAGAGTATACTTCGTGAAAACACAATTATTGAGGCACGCATGGTTGAATTTCCCCCAATGCCTACTGTTTCTGACGAGGCAAAGGCATTTATTCGGCGTTGTCTAACCTATAATCAGGCTGAGAGACCAGATGTATTGATTATTGCTCAAGATCCATATCTCACCTTTGTTACTCTCTCACCTGACCAAGAAAGCATGCTAAACATCTGA 1542 0.4248 MEDMERKFEQRFARMEAQNAETAKKIFGILESLIQKVNSIEKPPADSAVIGLGTVTEEKPLGTVTEEKPPSHVGIEANLNGLELTELKKLDVKRRKTISELLISTSKAERKETRLKVRQDSLRLGSVDFISAGTVLSEVWKDGHVFSDLNAKQEKLQEEREAIEQQLLKITPSGATRNNFQEQEAVLEQRDRYELEKERLIREMKRIRDEDGSRFNGFQILKDRYVLLNLLGKGGYGEVYKAFDLAEHRYVACKIHGVNVQWSEAIKQNYIKHTNRECRIHKSLVHDHIVRIWEIFLIDKNTGCSVQEYCMGKDLDALLKASPILPEREARVILVQIFHALVYLNTRTQKIIHYDLKPGNVLFDEFGVAKLTDFGLSKIVENDVGSQGMELTSHGAGTYWYLPPECFDFRKTPLISSKVDVWSAGILFYQMLFGKRPFGHGQTQESILRENTIIEARMVEFPPMPTVSDEAKAFIRRCLTYNQAERPDVLIIAQDPYLTFVTLSPDQESMLNI* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3012 513 SMART serkin_6 225 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3012 513 Gene3D Transferase(Phosphotransferase) domain 1 217 511 - -
Tpr1g3012 513 Coils Coil 146 169 - -
Tpr1g3012 513 PANTHER TOUSLED-LIKE KINASE, ISOFORM G 89 507 - -
Tpr1g3012 513 SUPERFAMILY Protein kinase-like (PK-like) 218 501 IPR011009 -
Tpr1g3012 513 Pfam Protein kinase domain 225 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3012 513 PANTHER MIXED LINEAGE PROTEIN KINASE 89 507 - -
Tpr1g3012 513 CDD STKc_TLK 224 497 - -
Tpr1g3012 513 Coils Coil 183 210 - -
Tpr1g3012 513 ProSitePatterns Protein kinases ATP-binding region signature. 231 254 IPR017441 GO:0005524
Tpr1g3012 513 ProSiteProfiles Protein kinase domain profile. 225 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3012 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 351 363 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3012 Tpr-Chr1 34531976 34536902 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3012 208 498 MAP Kinase Kinase Kinase AT3G13530 28.428 1.24e-25 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Tpr1g3012 Pkinase 1.7e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3012 K08864 - pop:18098034 611.298