Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3011 ATGTGTGGTGGCTATCCAGGATTTAAGTTAATTTGTTCATCAAACCAAACTATGATTGAACTTCCTCACAAAGTGAAACTTAATGTCGAAAACATTGACTACACACAACAAACTATTCAACTATCCGATCCACAAAGTTGTCTTTATAAACATATCCACAACCTCAATCTTTCAAAATCTCATTTCAAGTACTTTGATGAACTTGTTGAGTATTACTTTTTGAATTGTTCACTCTCAGTTAGACATGAGATGGACTCGTATTTTGTTCGATGTCTAAGTACCTCAACCTCGCAAGTTTATGCTATCCCTTCTTATGAACGAATCAGATATCTTCCCCTTTACTCTTGCACCAAAATGTTTAATGTTTCATTAAACCCTTCTTATACTTATTATGATTATGTTCCAAACATAAACTCTCTTCGTTTGAAGTGGCTTGAGCCTAATTGCAAAGACTGTGAATCATATTTATATTTCGCCAACAAAGTACATTGTTTCGCCAAAAACAAACAAGGTAATAATTTACCTTATACTGTCAAATTCATAAACGCTGGGTCAATTCTAGGTTCGTTGTTTTTTATCTTATTAGTTAGTGCAGTTTATCATATTTATGACTCATATGTACTAAAAAAAGCAAAACAAGCAATTATAGAAAAGTTTTTAGAAGACTATAAAGCTCTTAAGCCTACGAGATACTCTTATGTAGAAATTAAGAGAATCACAAATAACTTTGGAGACAAGTTAGGAGAAGGAGCGTATGGAAATGTATATAAAGGATGCATTTCAAAAGAATTCAGTATTGCCGTGAAGATACTCAGTGTTTCTGAAGGAAATGGGCAAGATTTTCTCAACGAAGTTGGTACAATAGGTAGAATCCACCATGTTAATATTGTTCGATTGATCGGTTTTTGTGCTGATGGCTTTAAAAGAGCTTTGATTTATGAATTTTTACCAAATGGTTCGCTGCAGAAGTTCATAAATTCACCAGAAAACAAGAAAATCTTCCTTGGATGGAAAAAGTTACACGAAATTGCTTTAGGAATGGCTAAAGGAATTGAATATCTTCATCAAGGTTGTGATCAACGCATCCTCCATTTCGATATCAAACTGCAAAATGTGTTACTTGACCATAATTTTATTCCAAAAATATCTGACTTTGGTTTAGCTAAATTATGTTCAAGGGATCGGAGCATGGTGTCAATGACTACAGCTAGAGGAACTTTGGGATACATTGCTCCCGAAGTTTTTTCAAGGAACTTTGGAAACGTGTCTTATAAATCAGATGTTTATAGTTACGGAATGATGTTGCTTGAAACAATAGGAGGGAGGAAAATCACAGAGGACTCGGAGGAAAACTCTAGTCATGTTTACTATCCGGAATGGATTTATAATCTTATAGATGATCAAGAGGAAATGAGAATTCATGTTGATAATGAAGGGGATGAAGAAATTGCAAGAAAAATGGGCATTGTGGGACTTTGGTGCACTCAGTGGCATGCTATGCATAGACCATAA 1512 0.3446 MCGGYPGFKLICSSNQTMIELPHKVKLNVENIDYTQQTIQLSDPQSCLYKHIHNLNLSKSHFKYFDELVEYYFLNCSLSVRHEMDSYFVRCLSTSTSQVYAIPSYERIRYLPLYSCTKMFNVSLNPSYTYYDYVPNINSLRLKWLEPNCKDCESYLYFANKVHCFAKNKQGNNLPYTVKFINAGSILGSLFFILLVSAVYHIYDSYVLKKAKQAIIEKFLEDYKALKPTRYSYVEIKRITNNFGDKLGEGAYGNVYKGCISKEFSIAVKILSVSEGNGQDFLNEVGTIGRIHHVNIVRLIGFCADGFKRALIYEFLPNGSLQKFINSPENKKIFLGWKKLHEIALGMAKGIEYLHQGCDQRILHFDIKLQNVLLDHNFIPKISDFGLAKLCSRDRSMVSMTTARGTLGYIAPEVFSRNFGNVSYKSDVYSYGMMLLETIGGRKITEDSEENSSHVYYPEWIYNLIDDQEEMRIHVDNEGDEEIARKMGIVGLWCTQWHAMHRP* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3011 503 SUPERFAMILY Protein kinase-like (PK-like) 225 503 IPR011009 -
Tpr1g3011 503 Pfam Wall-associated receptor kinase galacturonan-binding 2 43 IPR025287 GO:0030247
Tpr1g3011 503 SMART serkin_6 241 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3011 503 ProSitePatterns Protein kinases ATP-binding region signature. 247 269 IPR017441 GO:0005524
Tpr1g3011 503 PANTHER RECEPTOR-LIKE KINASE 4 503 - -
Tpr1g3011 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 362 374 IPR008271 GO:0004672|GO:0006468
Tpr1g3011 503 Pfam Protein kinase domain 244 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3011 503 ProSiteProfiles Protein kinase domain profile. 241 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3011 503 Gene3D Phosphorylase Kinase; domain 1 215 315 - -
Tpr1g3011 503 Gene3D Transferase(Phosphotransferase) domain 1 316 503 - -
Tpr1g3011 503 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 503 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3011 Tpr-Chr1 34507783 34509782 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3011 221 503 Receptor kinase-like Gene Family AT1G66910 52.941 9.72e-98 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3011 Pkinase 4.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3011 - - mtr:MTR_1g031540 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3011 1 34507783 34509782 Tpr1g3011 1 34507783 34509782 ECH