Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3010 ATGTCATCGTTAATTACCTCTGGTGCATTAACCCTTGTGGTGGTAATATTGATTCTCCTTCCTTACAACAAAGTTGATGGTGATGAACATGAAGAGTCATGTTCAAGAAAGTGCGGTGTCCATAACATCAGCTACCCTTTCCGACTGAAAGACAGTCCCAAAAAATGTGGTGACAAAAGGTATACTCTATCTTGTGAGGACAACAACCAATTGATTTTGTACTACAAGTTAAGAAGATACTACAAGACTATCGGAAAATATTATGTACAATCGATCAATTACAACAACTTCACCGTACGACTATTGGATTCCCAGCTCCCTCCTTATTATTATTCACTAGGCCTGTATAATATAACTTCCAATATAGGTTTCGTAGGAGTGCCGGACACAGAGTATGGGTACAATAGATCATTATTGGTGAACGTATTATATCTGAGATGTCCGAATCGAGTCCATTATTCTTCTGGTATTTCCTTTGATGAACATGCTGCCTGTATGAATACGAAGAGTATTACACAAGGCAATTCTTTCTATGTCAATATTGGACACGATTACAAAAATCTTTCGGAATTGGAGCTGGGAGATGGGTGTGGTATAGAATTGATGTTTCTTACATCTTGGCCTGTTGTTGAAGATGATGGTGGCAACAACAGCAACAAAATGTCTTGTACAGATATTCGTCGTATGATGTTTTATGGATTTGAACTTTCTTGGCTCAATACTCACTGCGAAGATGGTATGTATCCGGAGCTTGGTTATTATGATCTCTGTACATCAGGTTTAGGGGCAGGACACAGCAATTTAAATGTGGCTTGGCTATTTGTAAAAGATATTTTGATTTATTACATAGGTCCCCTTATTTTTATGTTCAGCGTTTTAAAATTTGTTGTTGGAGCGCCATGTATCATTGCATTAATAATCTACAAATGGCGAAGAAAGCATCTATCTATGTATGATGGTATTGAAGTTTTTCTAAGCAGTGACAATAGTATCATTCCTATAAGGTACTCTTACAAAGACATAAGAAAGATAACAAAACAATTCAAGACAAAATTAGGCAGTGGAGGTTATGGATCTGTTTTTAAAGGACAATTAAGGAGTGGTCGTCTTGTAGCAGTCAAATTATTGGATAATGTCAAGTCTAACGGTCAAGATTTTGTCAATGAAGTTGCTACCATTGGTCAGATTCACCACGTTAACATTGTACAACTTATTGGTTTTTGTGTGGAGGGTTCTAAACGTGCTCTTATATATGAATTCATGTTAAATGGGTCACTTGAAAAATACATATTTTCTCATAATGAAGAGAGTAATTCCTTGAATTGTGAAAAATTGCATGCCATTTCTCTTGGGGTGGCTAGAGGCATTGAATATTTGCATAATGGATGCAATATGAAAATTCTACACTTTGACATAAAGCCTCATAACATCCTTCTTGATGAAAACTTTAATCCAAAAGTATCTGATTTTGGACTAGCGAGACTTTGTCCTACAGATAAAAGTATTGTGTCATTAACTGCAGCAAGAGGAACCATTGGGTACATGGCCCCTGAATTATTCTACAGAAATGTTGGCACAATAACTTACAAAGCTGATGTCTATAGCTTTGGGATGTTGTTAATGGAGATGGCAAATAGAAGGAAGAACTTGAATGCATTGGCTGAGCAATCCAGTCAGATATATATCCCTTTTTGGGTTTATGATCAATTAAAAGATGGAAGGGAAATAACAATTGAGAATGATACATATCAAGAAATGAAATTGGCAAAGAAAATGATGATTGTGGCTTTATGGTGTATACAAACAAAACCTAGTGATCGTCCTTCAATGAATAAAGTAATTGAGATGCTTGAAGAAGAAGATAGCAATTTACAAATGCCTAATAAGCCTTACTTGTATGCACAAGATCTACCAGCTGAGGATGTTAGAGATGATAGTATTGACAGTTCATGA 1953 0.36 MSSLITSGALTLVVVILILLPYNKVDGDEHEESCSRKCGVHNISYPFRLKDSPKKCGDKRYTLSCEDNNQLILYYKLRRYYKTIGKYYVQSINYNNFTVRLLDSQLPPYYYSLGLYNITSNIGFVGVPDTEYGYNRSLLVNVLYLRCPNRVHYSSGISFDEHAACMNTKSITQGNSFYVNIGHDYKNLSELELGDGCGIELMFLTSWPVVEDDGGNNSNKMSCTDIRRMMFYGFELSWLNTHCEDGMYPELGYYDLCTSGLGAGHSNLNVAWLFVKDILIYYIGPLIFMFSVLKFVVGAPCIIALIIYKWRRKHLSMYDGIEVFLSSDNSIIPIRYSYKDIRKITKQFKTKLGSGGYGSVFKGQLRSGRLVAVKLLDNVKSNGQDFVNEVATIGQIHHVNIVQLIGFCVEGSKRALIYEFMLNGSLEKYIFSHNEESNSLNCEKLHAISLGVARGIEYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLCPTDKSIVSLTAARGTIGYMAPELFYRNVGTITYKADVYSFGMLLMEMANRRKNLNALAEQSSQIYIPFWVYDQLKDGREITIENDTYQEMKLAKKMMIVALWCIQTKPSDRPSMNKVIEMLEEEDSNLQMPNKPYLYAQDLPAEDVRDDSIDSS* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3010 650 SUPERFAMILY Protein kinase-like (PK-like) 326 618 IPR011009 -
Tpr1g3010 650 PANTHER RUST RESISTANCE KINASE LR10-RELATED 286 637 IPR045874 GO:0004672
Tpr1g3010 650 PANTHER RUST RESISTANCE KINASE LR10-RELATED 11 245 IPR045874 GO:0004672
Tpr1g3010 650 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Tpr1g3010 650 Gene3D Transferase(Phosphotransferase) domain 1 421 629 - -
Tpr1g3010 650 Pfam Wall-associated receptor kinase galacturonan-binding 34 103 IPR025287 GO:0030247
Tpr1g3010 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Tpr1g3010 650 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 286 637 - -
Tpr1g3010 650 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 11 245 - -
Tpr1g3010 650 Gene3D Phosphorylase Kinase; domain 1 327 420 - -
Tpr1g3010 650 Pfam Protein kinase domain 348 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3010 650 ProSiteProfiles Protein kinase domain profile. 346 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3010 650 SMART serkin_6 346 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3010 Tpr-Chr1 34504785 34507409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3010 3 638 Receptor kinase-like Gene Family AT5G38260 34.691 3.80e-107 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3010 Pkinase 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3010 - - aip:107605930 707.597