Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3009 ATGGGTAGAATCCACCATGTTAATATTGTTCGATTGATCGGTTTTTGTGCAGATGGCTTTAAAAGAGCTCTAATTTATGAATTTTTACCAAATGGTTCGCTGCAGAAGTTCATAAATTCACCAGAAAACAAGAAAAACTTCCTTGGTTGGAAAAAATTGCACGAAATTGCTTTAGATATAGCTAAAGGAATTGAGTATCTTCATCAAGGTTGTGATCAACGCATCCTCCATTTCGATATCAAACCACAAAATGTGTTACTTGACCATAATTTTATTCCAAAAATATCTGACTTTGGTCTAGCTAAATTATGTGCAAGGGATCGGAGCATGGTGTCAATGACCACAGCTAAAGGAACTTTGGGATACATTGCTCCCGAAGTGTTTTCAAGGAACTTTGGAAACGTGTCTTACAAATCAGATGTTTATAGTTATGGAATGATGTTGCTTGAAACAATAGGAGGGAGGAAAATCACAGAGGACTTAGAGGAAAACTCTAGTCATGTTTACTATCCAGAATGGATTTATAATCTTATAGATGATCAAGAGGAAATGAGAATTCATGTTGATAATGAAGGGGATGAAGAAATTGCAAGAAAAATGGGCATTGTGGGACTTTGGTGCATTCAGTGGCATGCTATGGATAGACCATCAATGCAAATGGTGGTTCAGATGTTGGAAGGAGATGTAGACAAAACTCCAATACCTCCCAATCCTTTTGCTTCTCAATCTAGACAGCCTAGGAGAAATGGTGCAACTGCAACTACTAGACAACTAACCCAAGATTTAGATGTAATTCAAGAGTTAGATGACTTGCCATTGCTAAATCTGTGTTAA 834 0.3705 MGRIHHVNIVRLIGFCADGFKRALIYEFLPNGSLQKFINSPENKKNFLGWKKLHEIALDIAKGIEYLHQGCDQRILHFDIKPQNVLLDHNFIPKISDFGLAKLCARDRSMVSMTTAKGTLGYIAPEVFSRNFGNVSYKSDVYSYGMMLLETIGGRKITEDLEENSSHVYYPEWIYNLIDDQEEMRIHVDNEGDEEIARKMGIVGLWCIQWHAMDRPSMQMVVQMLEGDVDKTPIPPNPFASQSRQPRRNGATATTRQLTQDLDVIQELDDLPLLNLC* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3009 277 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 268 IPR045874 GO:0004672
Tpr1g3009 277 MobiDBLite consensus disorder prediction 236 256 - -
Tpr1g3009 277 Pfam Protein kinase domain 2 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3009 277 ProSiteProfiles Protein kinase domain profile. 1 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3009 277 Gene3D Transferase(Phosphotransferase) domain 1 30 233 - -
Tpr1g3009 277 PANTHER RECEPTOR-LIKE KINASE 1 268 - -
Tpr1g3009 277 SUPERFAMILY Protein kinase-like (PK-like) 1 226 IPR011009 -
Tpr1g3009 277 Gene3D Phosphorylase Kinase; domain 1 1 29 - -
Tpr1g3009 277 SMART serkin_6 1 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3009 277 ProSitePatterns Serine/Threonine protein kinases active-site signature. 75 87 IPR008271 GO:0004672|GO:0006468
Tpr1g3009 277 PIRSF ILK 1 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3009 Tpr-Chr1 34490761 34491939 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3009 1 242 Receptor kinase-like Gene Family AT1G66910 55.061 1.56e-89 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3009 Pkinase 8.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3009 - - mtr:MTR_1g031540 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3009 1 34490761 34491939 Tpr1g3009 1 34490761 34491939 ECH