Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3008 ATGGCATCCTGCGCCTCTGCTACACTAACCCTTGCGGTGGTATTAATAATACTAATATTCCTATACAACAATGTCTATGGTGATGGTGATGAACAACAACTACAACTACAACGACAACAACAACAACAATCATGTTCTACAAAGTGCGGTGTCCATAACATCAGCTACCCTTTCCGGTTAGAAGACAGTCCCAAAATGTGTGGCGACGAAAGGTACATCCTATCATGTGAGGATAATGACCAATTGATTTTGTATTATGAATCAAAATTACCAAAAAAAGTAAGGAGTATTTGGGGTTCCAAGAAAACAAACAAGAATGTAAGGAGAAAAAAAGCTCTCAAATATTATGTACAATCAATCAATTACAACAACTTCACTATACGGCTATTGGATTTCAATCTTGTTTCTAGTTCTAGAAATAATTCTATCCCTCCTTATAAGTATTCTTTAGGACTCTATAAATTCAGTTCTTTCTCCGCCTTACCCTACCTTTTCTATCAATACAAAAACGACTCGTTCAAGAATATATTGATGAGGTCTATGTTATATGTGAGTTGTCCGAATCGGGTGGATTCTTATCAATATAGGTATGGTGCTAATTGTATAAATAGTACGTTATATTCACTGTTCGGGAATTCTTTCTATGTTGATAGCGACAACAAATCTCTATCGGAATTGAGGCTGGGAGACGGGTGTCATATAGAGTTTATGTATCTCACATCTTGGCCTCTGGAAGTTGGTCATGGTGGTCGCGGCAGCAACAATAACATGTCTTGTAAGGACATCCGCAATATGATGTTTTACGGATTTGAACTTTCTTGGATCAATGGCCTTTGTAAATATGGTTGGTATGTAAAGTTCCACGACAATAACCAGAGTAAATGTGTACCTTCAGGGAATTATGTGCCTTTCAGTTTCAAAAGTACCTCGATTGGCTTAGGTGCGATGGGGTTTTTGTTCAGCATTATTAAATTTATTCTTGGAGTGCCATGTATCATTATAATATTAATCTACAAATGCCGACGCAAACATTTATCTATGTATTATGGCATTGAAGATTTTCTACGTAGTAGTGACAATCGCATCATGCCTCTAAGGTACTCTTATAAAGAAATTAAAAAGATAACACAACAATTCAAGACAAAATTAGGCAATGGAGGTTATGGATCTGTTTTTAAAGGACAACTTCGAAGTGGTCGACTTGTAGCAGTCAAATTATTGGACAAAGGCAAGTCCAACGGTCAGGACTTTATCAATGAAGTTGCTACTATTGGTAGGATTCACCATGTTAACGTGGTACAACTTATTGGTTTTTGTGTTGAGGGGTCAGAACGTGCTCTTATATATGAATTCATGTCAAACGGGTCACTCGAAAAATACATATATTCTAATATTGAAGTGAGATATTCATTGAGTTGCGAAAAATTGCATACCATTTCTCTTGGAGTGGCTCGAGGCATTGAGTACTTGCATAATGGATGTAGTATGAAAATTCTACACTTTGATATAAAGCCTCATAACATTCTTCTTGATGAGAATTTCAATCCAAAAGTTTCCGATTTCGGGTTAGCTAGACTTTGTCCTACGGATAACAGTATTGTGTCATTAACTGCAGTAAGAGGAACCATTGGATATATGGCCCCGGAACTATTCTACAGAAATGTCGGAACAATATCTTACAAAGCTGATATCTATAGTTTTGGGATGTTGTTAATGGAGATGGCAAGTAGAAGGAAGAATTTGAAGGCATTAGCTGAGCAATCCAGCCAAATTTATTTTCCTTTTTGGGTTTATGATCAGTTACAAGATGGAAGGGAAATAACAATTGAGAATGATACAAATCAAGAAACAAAATTGGCAAAGAAAATGATGATTGTAGCTTTGTGGTGTATACAGACAAAACCCGACGATCGTCCACCAATGGATAAAGTGTTGGAGATGCTTGAAGAAAAAAATGGAGATTTGGAAATGCCTAATAAGCCTTACCTTTATGCACAAGATCAAACAGCTGAGGATGCTATTGATGATGATAGTACTAGCAGTTCATGGTCTTCCAATGTACATTAA 2067 0.3657 MASCASATLTLAVVLIILIFLYNNVYGDGDEQQLQLQRQQQQQSCSTKCGVHNISYPFRLEDSPKMCGDERYILSCEDNDQLILYYESKLPKKVRSIWGSKKTNKNVRRKKALKYYVQSINYNNFTIRLLDFNLVSSSRNNSIPPYKYSLGLYKFSSFSALPYLFYQYKNDSFKNILMRSMLYVSCPNRVDSYQYRYGANCINSTLYSLFGNSFYVDSDNKSLSELRLGDGCHIEFMYLTSWPLEVGHGGRGSNNNMSCKDIRNMMFYGFELSWINGLCKYGWYVKFHDNNQSKCVPSGNYVPFSFKSTSIGLGAMGFLFSIIKFILGVPCIIIILIYKCRRKHLSMYYGIEDFLRSSDNRIMPLRYSYKEIKKITQQFKTKLGNGGYGSVFKGQLRSGRLVAVKLLDKGKSNGQDFINEVATIGRIHHVNVVQLIGFCVEGSERALIYEFMSNGSLEKYIYSNIEVRYSLSCEKLHTISLGVARGIEYLHNGCSMKILHFDIKPHNILLDENFNPKVSDFGLARLCPTDNSIVSLTAVRGTIGYMAPELFYRNVGTISYKADIYSFGMLLMEMASRRKNLKALAEQSSQIYFPFWVYDQLQDGREITIENDTNQETKLAKKMMIVALWCIQTKPDDRPPMDKVLEMLEEKNGDLEMPNKPYLYAQDQTAEDAIDDDSTSSSWSSNVH* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3008 688 Gene3D Phosphorylase Kinase; domain 1 356 451 - -
Tpr1g3008 688 PANTHER RUST RESISTANCE KINASE LR10-RELATED 32 89 IPR045874 GO:0004672
Tpr1g3008 688 PANTHER RUST RESISTANCE KINASE LR10-RELATED 113 280 IPR045874 GO:0004672
Tpr1g3008 688 PANTHER RUST RESISTANCE KINASE LR10-RELATED 319 675 IPR045874 GO:0004672
Tpr1g3008 688 ProSitePatterns Protein kinases ATP-binding region signature. 383 405 IPR017441 GO:0005524
Tpr1g3008 688 Pfam Wall-associated receptor kinase galacturonan-binding 45 131 IPR025287 GO:0030247
Tpr1g3008 688 MobiDBLite consensus disorder prediction 657 688 - -
Tpr1g3008 688 ProSiteProfiles Protein kinase domain profile. 377 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3008 688 Pfam Protein kinase domain 379 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3008 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 498 510 IPR008271 GO:0004672|GO:0006468
Tpr1g3008 688 Gene3D Transferase(Phosphotransferase) domain 1 452 659 - -
Tpr1g3008 688 SUPERFAMILY Protein kinase-like (PK-like) 358 651 IPR011009 -
Tpr1g3008 688 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 32 89 - -
Tpr1g3008 688 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 113 280 - -
Tpr1g3008 688 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 319 675 - -
Tpr1g3008 688 SMART serkin_6 377 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3008 Tpr-Chr1 34487605 34490136 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3008 366 688 Receptor kinase-like Gene Family AT5G38280 48.476 8.82e-108 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3008 Pkinase 4.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3008 - - aip:107605930 707.983