Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3007 ATGTCATCCTTAACCCTTGCTATGGTGGTTGTAGTGTTACTAATACTAATATTCCCTTACAGCAAAGTGTATGGTGAAGAACAACAAGATTCATGTTTACGAAGGTGCGGTGTCCATAACATCAGCCACCCTTTTCGGTTGAAAGATGGTCCGGAAAAATGTGGCGATAAGAGGTACAACCTATCATGTGAGGACAACAACCAATTGATTTTGTACTATGAATCTGGAAAATACTTTGGAAAATACTATGTACAATCAATTAATTACAACAACTTCACCATAAGATTATTGGATTTCAATCATCTTGGTTCCTCTAATTATTCTCTCCTCCCTCCTTATTATTCATTAGGACTCTACAATTTCAGTTCATCCTTAACCTCACCCTATGAATACACAAACCAATATCATCTATTGTCGAAATCTATATTATATGTAAGCTGTCCAAATAAGGTACAATATTCCTCCGGTTATATGTATGGTGCTAACTGTATGAATAGTACTTCGTATTCACAATACGAGAATTATTTCTATTTTAATGGCTACAATGAATCTCCGTCGGAATTGGATTTGGGAGACGAGTGTCGTATAGAGTTTATGTATCTCACATCTTGGCCTCTGGAACATGATGGTGGTCGTCGTGGCAACAACAACATTTCTTGTATGAACATCCGTCATATGATGTTTTATGGATTTGAACTTTCTTGGCTCAATAGTATTTGTAAAGATGGTTGGGCTCCGCAGCTCGTTGACAATAACCAGCTTATCTGTATAGATTACAGGTCACATAGTTTTTTAAGTGTGGGTTTCTTGGTCGCCTTCATAGGTCAGCTGATTGCTTTGTGCATCGGTGTTAAATTTGTTCTTGGAGCGCCCTGCATCCTTATATTAATAATCTACAAATGGCGACGAAAACATCAATCTATGTATGACAGCATCGAAGATTTTCTACGTAGTGACAATAGCATCATTCCTATAAGGTACTCTTACAAAGATATAAAAAAGATAACCGACAAATTTAAGACAAAATTAGGCAGTGGTGGTTATGGATCTGTTTTTAAAGGACAACTTCGAAGTGGTCGTCTAGTAGCAGTCAAATTATTGGATAAAGTAAAGTCTAACGGTAAAGATTTTGTCAATGAAGTTGCTACCATTGGTAGGATTCATCATGTTAATGTTGTACAACTTATTGGCTTTTGTGTGGATGGTTCTAAACGTGCTCTTATATATGAATTTATGCCAAATGGGTCACTCGAAAAATACATATTTTCTCATACTGGAGAGAGTAATTTCTTGAGTTGTGAAAATTTGTATGCCATTTCTCTTGGAGTGGCTCGAGGCATTGAATATTTGCATAATGGATGCAATATGAAAATTCTACACTTTGACATAAAGCCTCATAACATCCTTCTTGATGAAAACTTCAATCCAAAAGTATCTGATTTTGGATTAGCGAGACTTTGTCCTACAGATAAAAGTATTGTGTCATTAACCGCCGCAAGGGGAACCATTGGATACATGGCCCCTGAATTATTCTACAGAAATGTTGGTACAATATCTTACAAAGCCGATGTCTATAGCTTTGGAATGTTGTTAATGGAGATGGCAAATAGAAGGAAGAACTTGAATGCATTGGCTGAGCAATCCAGCCAGATTTATATCCCTTTTTGGGTTTATGATCAATTAAAAGATGGAAGGGAGATAACAATTGAGAATGATACAAATCAAGAAATGAAATTGGCAAAGAAAATGATGATTGTGGCTTTATGGTGTATACAAACAAAACCTAGTGATCGTCCTTCAATGAATAAAGTAATTGAGATGCTTGAAGAAGAAGATAGCGATTTACAAATGCCTAATAAGCCTTACTTGTATGCACAAGATCTACCAGCTGAGGATGTTAGAGATGATAGTAGTGGCAGTACATGGTCTTCATCTAGTATATCGATAACTTATTCCAATGAAGCAACCTGA 1971 0.3628 MSSLTLAMVVVVLLILIFPYSKVYGEEQQDSCLRRCGVHNISHPFRLKDGPEKCGDKRYNLSCEDNNQLILYYESGKYFGKYYVQSINYNNFTIRLLDFNHLGSSNYSLLPPYYSLGLYNFSSSLTSPYEYTNQYHLLSKSILYVSCPNKVQYSSGYMYGANCMNSTSYSQYENYFYFNGYNESPSELDLGDECRIEFMYLTSWPLEHDGGRRGNNNISCMNIRHMMFYGFELSWLNSICKDGWAPQLVDNNQLICIDYRSHSFLSVGFLVAFIGQLIALCIGVKFVLGAPCILILIIYKWRRKHQSMYDSIEDFLRSDNSIIPIRYSYKDIKKITDKFKTKLGSGGYGSVFKGQLRSGRLVAVKLLDKVKSNGKDFVNEVATIGRIHHVNVVQLIGFCVDGSKRALIYEFMPNGSLEKYIFSHTGESNFLSCENLYAISLGVARGIEYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLCPTDKSIVSLTAARGTIGYMAPELFYRNVGTISYKADVYSFGMLLMEMANRRKNLNALAEQSSQIYIPFWVYDQLKDGREITIENDTNQEMKLAKKMMIVALWCIQTKPSDRPSMNKVIEMLEEEDSDLQMPNKPYLYAQDLPAEDVRDDSSGSTWSSSSISITYSNEAT* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3007 656 Gene3D Transferase(Phosphotransferase) domain 1 412 620 - -
Tpr1g3007 656 SUPERFAMILY Protein kinase-like (PK-like) 318 609 IPR011009 -
Tpr1g3007 656 CDD STKc_IRAK 343 610 - -
Tpr1g3007 656 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Tpr1g3007 656 ProSiteProfiles Protein kinase domain profile. 337 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3007 656 Pfam Wall-associated receptor kinase galacturonan-binding 32 98 IPR025287 GO:0030247
Tpr1g3007 656 SMART serkin_6 337 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3007 656 Gene3D Phosphorylase Kinase; domain 1 317 411 - -
Tpr1g3007 656 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 8 242 - -
Tpr1g3007 656 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 276 632 - -
Tpr1g3007 656 Pfam Protein kinase domain 340 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3007 656 PANTHER RUST RESISTANCE KINASE LR10-RELATED 276 632 IPR045874 GO:0004672
Tpr1g3007 656 PANTHER RUST RESISTANCE KINASE LR10-RELATED 8 242 IPR045874 GO:0004672
Tpr1g3007 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3007 Tpr-Chr1 34477514 34481688 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3007 326 641 Receptor kinase-like Gene Family AT5G38280 49.844 1.48e-103 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3007 Pkinase 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3007 - - aip:107605930 729.554