Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3006 ATGGCATTTTTAATATTCAAATGGCGACAAAAACATTTATCTATGTATGATGGCATCGAAAATTTTCTACGTAGCGACAATAGCATCATGCCTATAAGATACTCTTACAAAGACATAAAAAAGATAACAGAACAATTCAAGACAAAACTAGGCAATGGAGGTTACGGATCTGTTTTCAAAGGACAACTTCGAAGTGGTCGTCTTGTAGCAGTCAAGTTATTGGACAATGGCAAGTCTAATGGTCAAGATTTTGTTAATGAAGTTGCAACCATTGGTAGGATTCACCATGTTAACGTGGTACAACTCATTGGTTTTTGTGTGGAGGGTTCAAAACGTGCTCTTATATATGAATTCATGCCGAATGGGTCACTTGAAAAATACATATTTTCTCATACTGAAGAGAGTAATTCCTTGAGTTGTGAAAAATTGTATGACATTTCTCTTGGAGTGGCTCGAGGCATTGAGTACTTGCATAATGGATGCAATATGAAAATTCTACACTTTGACATAAAGCCTCATAACATCCTTCTCGATGAAAATTTCAATCCAAAAGTTTCTGATTTTGGACTAGCTAGACTTTGTCCAACCGATAATAGTATTGTGTCATTAACTGCAGTAAGAGGAACCATTGGATACATGGCCCCTGAACTATTCTACAGAAATGTCGGCACAATATCTTACAAAGCCGATGTCTATAGTTTTGGGATGTTGTTAATGGAGATGGCAAGTAGAAGGAAGAATTTGAATGCATTAGCTGAGCAATCCAGCCAAATTTATTTTCCTTTTTGGGTTTATGATCAGTTACATGATGGAATAGATGTAACAATTGAGAATGACACAGATAACGAAATGAAATTGGCAAAGAAAATGATGATTGTAGCTTTGTGGTGTATACAGACAAAACCTAATGACCGTCCTCCAATGGATAAAGTGTTGGAGATGCTTGAAGAAGAAGATGAGAATTTGCAAATTCCTAACAAGTGTTACATTTATGCACAAGATGTAAGAGCTGAGGATGTTACTGATAATACTGCTAGCAGTTCATGGTCTTCCTCTTGTACATCAATAACTTATTCCAAGGAATAA 1086 0.36 MAFLIFKWRQKHLSMYDGIENFLRSDNSIMPIRYSYKDIKKITEQFKTKLGNGGYGSVFKGQLRSGRLVAVKLLDNGKSNGQDFVNEVATIGRIHHVNVVQLIGFCVEGSKRALIYEFMPNGSLEKYIFSHTEESNSLSCEKLYDISLGVARGIEYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLCPTDNSIVSLTAVRGTIGYMAPELFYRNVGTISYKADVYSFGMLLMEMASRRKNLNALAEQSSQIYFPFWVYDQLHDGIDVTIENDTDNEMKLAKKMMIVALWCIQTKPNDRPPMDKVLEMLEEEDENLQIPNKCYIYAQDVRAEDVTDNTASSSWSSSCTSITYSKE* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3006 361 Gene3D Phosphorylase Kinase; domain 1 23 118 - -
Tpr1g3006 361 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 329 IPR045874 GO:0004672
Tpr1g3006 361 Pfam Protein kinase domain 46 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3006 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Tpr1g3006 361 Gene3D Transferase(Phosphotransferase) domain 1 119 330 - -
Tpr1g3006 361 PANTHER INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1, PUTATIVE-RELATED 1 329 - -
Tpr1g3006 361 SMART serkin_6 44 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3006 361 ProSiteProfiles Protein kinase domain profile. 44 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3006 361 SUPERFAMILY Protein kinase-like (PK-like) 24 316 IPR011009 -
Tpr1g3006 361 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3006 Tpr-Chr1 34473942 34475454 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3006 33 348 Receptor kinase-like Gene Family AT5G38280 50.156 2.19e-110 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3006 Pkinase 3.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3006 - - mtr:MTR_1g031200 586.645