Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3004 ATGAACACTTATTATCATATCATGGGATTGGTGTTGTTGTTCATGGTTTACTTTGTTGTTGGAACAACAAAAGCCAAGATAATTAACTGTTCAGAAGATATATCATGTGGAAATCAAGTTATAAAATTCCCTTTCCAAATCAAAAACCAAAATCCAATTTCACCTATGTGTGGTGGCTATCCAGGATTTGAGTTAATTTGTTCATCAAACCAAACTATGATTGAACTTCCTCACAAAGTGAAACTCAATGTCAAAAACATTGACTACAAACACCAAACTATTCAACTTTCTGATCCACAAGATTGCCTTGACAAACATATTCACAACCTCAATCTTTCAGAATCTCATTTCAACTACTTGAAAAGTGATTATGATGATTTTGTTGACTATCACTTTTTCAATTGTTCACTTTTGATTAGAAATGAGATAGATTTATATTTGGTTCCTTGTCTAAGTACCTCAACCTCTCAAACATATGTTATACCCTCAAGTCGATATTTCGAACAGCTTCCTCTTTCGTTTTGCACCAAAATGTTTAATGTTTCATTCAAACGTTATTCTGATTCTATTCGTTTGAGTTGGTCTACGCCTAATTGTAAAGTTTGTGAATCAAAAGGAAACATATGTAGATGGAAGAATACTACTAGTAGTACCAACAAGGACATAGAATGTTTCATCAAAAACAAGAAAGGTTCGTCAACGGCTCTAGTCAACACAGGGTCAGTTCTAGGATCGTTGTTTTTTATCTTGCTGACCGGCGCAGTCTACCATATTTATGACTCCTACATTCTGAAGAAAGCAAAACAAGCGATTATAGAAAAGTTTTTAGAAGATTATAGAGCTCTTAAGCCTACCAGATACTCTTATGTAGAAATTAAGAGAATCACAAATAATTTTAAAGACAAGTTAGGACAAGGAGCCTATGGAACTGTATATAAAGGGAACATTTCAAAAGAATTTATTGTTGCGGTGAAGATACTAAATTTTTCTCAAGGAAATGGGCAAGATTTCCTCAATGAAGTTGGTACAATGGGTAGGATCCACCATGTTAATATTGTTCGATTGATCGGTTTTTGTGCAGACGGCTTTAAAAGAGCTCTTATTTATGAGTTTTTACCAAATGGTTCTTTACAAAAGTTCATAAATTCACCAGACAACAAGAAAAACTTCCTTGGATGGAAAAAGTTACACGAAATTGCTTTAGGAATAGCTAAAGGAATTGAATATCTTCATCAAGGTTGTGATCAACGCATCCTGCATTTCGATATCAAACCACAAAATGTGTTACTTGACCATAATTTTATTCCTAAAATATCTGACTTTGGTCTAGCTAAATTATGTTCGAGGGATCAAAGCATGGTGTCAATGACCACAGCTAGAGGAACTTTGGGATATATTGCTCCCGAAGTTTTTTCAAGGAACTTTGGAAACGTGTCTTACAAATCAGATGTTTATAGCTATGGAATGATGTTGCTTGAAACAATAGGAGGGAGGAAGATTACGGAGGACATAGAGGAAAACTCTAGTCATGTTTACTATCCGGAATGGATTTATAATCTTATAGATGATCAAGAGGAAATGAGAATTCATGTTGATAATGAAGGGGATGAAGAAATTGCAAGAAAAATGGGCATTGTGGGACTTTGGTGCATTCAGTGGCATGCTATGGATAGACCATCAATGCAAATGGTGGTTCAGATGTTGGAAGGAGATGTAGACAAAACTCCAATACCTCCCAATCCTTTTGCTTCTCAATCTAGACAACCTAGGAGAAATGGTGGACTTGCAACTACTAGACAACTAACTCATGAGTTAGATGTAATTGAAGAGTTAGAATGA 1839 0.3502 MNTYYHIMGLVLLFMVYFVVGTTKAKIINCSEDISCGNQVIKFPFQIKNQNPISPMCGGYPGFELICSSNQTMIELPHKVKLNVKNIDYKHQTIQLSDPQDCLDKHIHNLNLSESHFNYLKSDYDDFVDYHFFNCSLLIRNEIDLYLVPCLSTSTSQTYVIPSSRYFEQLPLSFCTKMFNVSFKRYSDSIRLSWSTPNCKVCESKGNICRWKNTTSSTNKDIECFIKNKKGSSTALVNTGSVLGSLFFILLTGAVYHIYDSYILKKAKQAIIEKFLEDYRALKPTRYSYVEIKRITNNFKDKLGQGAYGTVYKGNISKEFIVAVKILNFSQGNGQDFLNEVGTMGRIHHVNIVRLIGFCADGFKRALIYEFLPNGSLQKFINSPDNKKNFLGWKKLHEIALGIAKGIEYLHQGCDQRILHFDIKPQNVLLDHNFIPKISDFGLAKLCSRDQSMVSMTTARGTLGYIAPEVFSRNFGNVSYKSDVYSYGMMLLETIGGRKITEDIEENSSHVYYPEWIYNLIDDQEEMRIHVDNEGDEEIARKMGIVGLWCIQWHAMDRPSMQMVVQMLEGDVDKTPIPPNPFASQSRQPRRNGGLATTRQLTHELDVIEELE* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3004 612 SMART serkin_6 297 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3004 612 PANTHER RECEPTOR-LIKE KINASE 32 611 - -
Tpr1g3004 612 Pfam Wall-associated receptor kinase galacturonan-binding 30 98 IPR025287 GO:0030247
Tpr1g3004 612 Gene3D Transferase(Phosphotransferase) domain 1 372 575 - -
Tpr1g3004 612 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Tpr1g3004 612 ProSiteProfiles Protein kinase domain profile. 297 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3004 612 PANTHER RUST RESISTANCE KINASE LR10-RELATED 32 611 IPR045874 GO:0004672
Tpr1g3004 612 Pfam Protein kinase domain 300 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3004 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Tpr1g3004 612 SUPERFAMILY Protein kinase-like (PK-like) 281 569 IPR011009 -
Tpr1g3004 612 Gene3D Phosphorylase Kinase; domain 1 272 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3004 Tpr-Chr1 34449398 34452058 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3004 12 585 Receptor kinase-like Gene Family AT1G66910 36.220 2.07e-115 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3004 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3004 - - mtr:MTR_1g031540 1001.89