Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2995 ATGTTGGCGACCACAATCTCAATCCTAACACCTTCTTCCAACCTCAACCCATCTCATTTCCTGCCTCCAACAACAACCAGACTCACACTCCCATCCTCTTCTTCAAAATCACACTCCAAACTCCCTCTTTTCGCCAGACTCAGTCACAGTCATAGTATCAATAGCAACGGTGGTGGTCCTGATCGTGCCGTCGGTCCCGCCTCACCCGAAATTGAAGTAGAAAGTGAAACAACTTCTGACTCTGGAGATAGCTATGTTGCCTTGTTTGTTCGTATGTTAGGCCTAGATCACGGTCCACCTGATAGAGAACAAGCTATAGTTACTCTTTGGCAATATTCACATGGTGGAAAGAAGCGTATTGACAATATAATGCAATATCCTGGTTGTATTAATCTTGTTGTGAACCTCCTTAGATCGGAGTCTAGTTTGTCATGCGAGGCAGCTGCAGGCCTTCTGCGTTCGGTATCTTCAATAGACATATATAGAGATTCTGTAGCAGATAGTGGAGCTATAGAAGAGATAAATAGATTGCTGATACAATCTGACTTGCCTCTTGAGGTAATATTGCAGAGTCTGAATGTACTGTGGAATTTATCTTTCGATGAGAAGGCCCGTGTTAAACTTGCAAAGAGTGATATTCATTTGTTAGCTATTAAGTACCTTGATGATGAGGATAAGATAGTGAAAGAAGCTGCAGCGGGTGTTTTGGCGAATTTAGCATTGAGCCAAGTTAACCACGACATCATGGTTGAAGCAGGTGTTATTCCAAAACTGGCAAAGTTCTTAACGTGTGACTCAGAAGGATCTCAAGTCACCAGAAAGGAAGCAAGGAATGCATTACTGGAACTTGCGAAGGACGATTATTACAGAATTCTTGTTATTGAGGAAGGTTTAGTTCCTGTGCCATTAATAGGTGCTGCAGCCTATAAGTCATACATCCCAGATAAACTTGAGCCGATGGCATTTCCAGATGGTACAGAAATTGAAAAGACTTGTAACAGACCTTCTGAATATGGCGCATCAGATTTTTTTGTTGGATTAAATGTTGATAATAATGCCGACATAGATGAAGCAAAAGTCAACGCAATTATCGGTAAGACACAACAGCAATTCCTTGTTCGCGCCGGTGCTATAGAAAGGGGAGAAACAGAACCTCGTGCTGAAGGTTCAGATGATCAACACCGTCTTACACTTTTACATTGGATCGATGGTGTTGCTCGTTTAGTACTGATACTAGAACTACAAGATATGCCAGCAATAATAAGAGCTGCAGAGTCAATTGCTAGTGCATGTATCAACGAACATATGCGTATTGCATTTAAGGAGGCTGGTGCAGTTAAGCATTTACTACGGCTTTTGTCTTGCGATGATAATGCAGTCCAGCTGGCAGCAACTCAAGCTTTGGAAAAGCTGTCTGTTAGCAATGTTATTTGTCGTGTAATTGAAGCTGAGGGTGGTTTAGGTCCTTTAGTTAGTATTTTAAAATCCTCAGATGTATCCGGAGCTATTGTGGGAAAGTCTTTGAACGTAATTGCTCAGATATTAGACCCTAATAAAGAGATGCAATTGAAGTTTTATGATGGACCAGTTACTGGATCTGAAACGGCATTTGGTGGAGACAACAATGATGGTTCAACAGGATTAAGTAGCACTGACCAAGCCGTATCGAAAACAAAGCCAAGGAACGATATACTGGACTCGGTTTTCACTGGACGCCTTGTTGAGCTTTTAAAGTGCTTTTCACCCAATTTACAAGAAAAGGCTGCATCTGTTCTGGAGTTTGTGGCATTGGCGGACCCAACACTGACTCCAATTATATCTGTGGATATTGAAAATGGTCTCAATTCTGCTTTTCAGCAAAATTTCTTGAAAATTTCAGCAGACACAGAATATGATGTGGAGGATCAGTTTTCAGCGGCATATGCTATTAAACTTGAAGAAGCTGGTCTTGCAATATCTGCAGCATCCCGGTTATTGACAAGACTACTTGACTCTAAGCAGTTTTGCGACAAATTAAATTTCTCCCGTTTCATTGACACCCTCCGCGAAATCCTCAAGTCCAATATTCCCCTACACAGCAAAGATTGGGTAGCTGCTTGTCTAGTTAAACTAAGTTCTCTCTCTGGTTACGACACAAATTCTAATCCAATTAACGTGGAAGTTACACTCTATGAGAAAATTCCAAGACTTGTAGAACAGATTAAAACTTCATTCTCCTTAGAAGCACAGGAAAATGCTGTTGTAGAACTTAATAGAATAGTGTCTGAAGGGGTGGTAGATTCCACCGGAGCTATTATTTCTGAAGGGGCGGTGTATCCTTTGGTGAAACTGATTGAAGAAGGTAGTGAAAGAGGTGTTGAAGCAAGCTTGACAATACTGTATAATCTGAGTATGGACAGTGAGAATCATGCAGCACTTGTAGCTGCTGGAGCAGTTCCAGCCTTAAGAAGAATTGTTCTGTCAGAAAAACCACAGTGGCAAAAGGCACTTCATTTGCTCCGGAGTTTGCAAACATGA 2517 0.4144 MLATTISILTPSSNLNPSHFLPPTTTRLTLPSSSSKSHSKLPLFARLSHSHSINSNGGGPDRAVGPASPEIEVESETTSDSGDSYVALFVRMLGLDHGPPDREQAIVTLWQYSHGGKKRIDNIMQYPGCINLVVNLLRSESSLSCEAAAGLLRSVSSIDIYRDSVADSGAIEEINRLLIQSDLPLEVILQSLNVLWNLSFDEKARVKLAKSDIHLLAIKYLDDEDKIVKEAAAGVLANLALSQVNHDIMVEAGVIPKLAKFLTCDSEGSQVTRKEARNALLELAKDDYYRILVIEEGLVPVPLIGAAAYKSYIPDKLEPMAFPDGTEIEKTCNRPSEYGASDFFVGLNVDNNADIDEAKVNAIIGKTQQQFLVRAGAIERGETEPRAEGSDDQHRLTLLHWIDGVARLVLILELQDMPAIIRAAESIASACINEHMRIAFKEAGAVKHLLRLLSCDDNAVQLAATQALEKLSVSNVICRVIEAEGGLGPLVSILKSSDVSGAIVGKSLNVIAQILDPNKEMQLKFYDGPVTGSETAFGGDNNDGSTGLSSTDQAVSKTKPRNDILDSVFTGRLVELLKCFSPNLQEKAASVLEFVALADPTLTPIISVDIENGLNSAFQQNFLKISADTEYDVEDQFSAAYAIKLEEAGLAISAASRLLTRLLDSKQFCDKLNFSRFIDTLREILKSNIPLHSKDWVAACLVKLSSLSGYDTNSNPINVEVTLYEKIPRLVEQIKTSFSLEAQENAVVELNRIVSEGVVDSTGAIISEGAVYPLVKLIEEGSERGVEASLTILYNLSMDSENHAALVAAGAVPALRRIVLSEKPQWQKALHLLRSLQT* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2995 838 MobiDBLite consensus disorder prediction 536 558 - -
Tpr1g2995 838 Gene3D - 389 613 IPR011989 -
Tpr1g2995 838 Pfam Armadillo/beta-catenin-like repeat 433 472 IPR000225 GO:0005515
Tpr1g2995 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 769 811 IPR000225 GO:0005515
Tpr1g2995 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 169 205 IPR000225 GO:0005515
Tpr1g2995 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 444 486 IPR000225 GO:0005515
Tpr1g2995 838 SUPERFAMILY ARM repeat 403 828 IPR016024 -
Tpr1g2995 838 Gene3D - 81 311 IPR011989 -
Tpr1g2995 838 SMART arm_5 799 838 IPR000225 GO:0005515
Tpr1g2995 838 SMART arm_5 557 597 IPR000225 GO:0005515
Tpr1g2995 838 SMART arm_5 242 285 IPR000225 GO:0005515
Tpr1g2995 838 SMART arm_5 433 473 IPR000225 GO:0005515
Tpr1g2995 838 SMART arm_5 201 241 IPR000225 GO:0005515
Tpr1g2995 838 SMART arm_5 758 798 IPR000225 GO:0005515
Tpr1g2995 838 SMART arm_5 157 200 IPR000225 GO:0005515
Tpr1g2995 838 MobiDBLite consensus disorder prediction 54 78 - -
Tpr1g2995 838 Gene3D - 627 838 IPR011989 -
Tpr1g2995 838 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 49 838 - -
Tpr1g2995 838 SUPERFAMILY ARM repeat 89 304 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2995 727 819 U-box Gene Family AT2G28830 38.298 4.79e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2995 - - lang:109360684 1068.91