Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2968 ATGGCAGAACGCGGTGGTGCAGCTGGAGGTGCAGCTGGAGAACGTGGCGGATTCGGAAGAGGTTTCGGAGGAAGAGGAGGAGGAGGAAGAGGCGGAGACAGAGGCCGTGGTCGTAGAAGAGCAGGCCGTCGTGAAGAAGAAGAAAAATGGGTTCCAGTAACAAAACTCGGCCGTCTCGTGAAAGAAGGTAAAATCCGTAGCCTTGAACAGATCTATCTTCATTCTCTTCCAATCAAAGAGCATCAAATCATCGACACACTCGTCGGTCCAACATTGAAAGATGAAGTGATGAAAATCATGCCGGTTCAGAAACAAACTCGAGCCGGTCAAAGAACCCGGTTCAAAGCATTTGTTGTAGTTGGTGATAACAATGGTCATGTTGGTTTAGGTGTTAAGTGTAGTAAAGAAGTTGCTACCGCGATTCGCGGTGCGATTATTCTTGCAAAATTGAGTGTGATTCCTATTAGGAGAGGTTATTGGGGTAATAAGATTGGTAAACCACATACTGTTCCTTGTAAGGTTACTGGTAAATGTGGTTCTGTTACTGTTAGAATGGTTCCTGCTCCTAGAGGTAGTGGAATTGTTGCTGCTAGGGTTCCTAAGAAGGTTTTGCAGTTTGCTGGGATTGATGATGTTTTTACTTCTTCCAGAGGATCTACTAAGACTCTTGGCAATTTTGTTAAGGCTACATTTGATTGTCTGATGAAAACCTATGGTTTCTTGACCCCTGAATTCTGGAAGGAGACTCGCTTCAGCAGATCACCATTCCAAGAGTTCACAGATCTGTTGGCAAAGCAACCAGGAAAGACCATAACCTTGGAGGAGGAAAGGGTGGAAGCTTGA 843 0.452 MAERGGAAGGAAGERGGFGRGFGGRGGGGRGGDRGRGRRRAGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFSRSPFQEFTDLLAKQPGKTITLEEERVEA* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2968 280 MobiDBLite consensus disorder prediction 1 48 - -
Tpr1g2968 280 Gene3D - 155 248 IPR014721 -
Tpr1g2968 280 TIGRFAM uS5_euk_arch: ribosomal protein uS5 45 252 IPR005711 GO:0003735|GO:0006412|GO:0015935
Tpr1g2968 280 SUPERFAMILY Ribosomal protein S5 domain 2-like 168 248 IPR020568 -
Tpr1g2968 280 PANTHER RIBOSOMAL S SUBUNIT 1 270 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tpr1g2968 280 ProSitePatterns Ribosomal protein S5 signature. 109 141 IPR018192 -
Tpr1g2968 280 Pfam Ribosomal protein S5, N-terminal domain 92 156 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tpr1g2968 280 ProSiteProfiles S5 double stranded RNA-binding domain profile. 92 155 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tpr1g2968 280 Gene3D - 49 154 - -
Tpr1g2968 280 SUPERFAMILY dsRNA-binding domain-like 88 157 - -
Tpr1g2968 280 Pfam Ribosomal protein S5, C-terminal domain 176 248 IPR005324 GO:0003735|GO:0005840|GO:0006412
Tpr1g2968 280 PANTHER BNAA03G19630D PROTEIN 1 270 - -
Tpr1g2968 280 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2968 Tpr-Chr1 34083574 34085358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2968 46 272 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 90.749 1.82e-153 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2968 K02981 - gmx:100797105 465.692