Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2960 ATGAATCAATGGAAGCCACCACCACCATCACCGCCGCCGCTAAACTCGTCCAAAACTCCATCCTCTACGGCGTCAGATTCACCTACGCAACACATCACCAACCGCTCCAATCGCAAAGACACTGTCAGGAAGAGGAGTGAGATGGAAGGTGGAGATCCGACTGCTGCTAGAAAAGTTAAGAAGGCGGACCGTGAGAAGATCAGGAGGGATCGGTTGAATGATAGTTTTCATCAAATGGGAAGAACTTTAGATCCTGATAGACCACAGAACGACAAGGCAACCATCATGACGGAGACAATCCAAGTGCTAAAGGACACAACAGCTAAAGTTGATAGACTGAAAACAGAACACAAATCAAATTCTGAAGAGTCACAAGAACTAATACAAGAAATTAATGACCTCCGAGAAGAGACAGCATCTTTAAAATCCGACGTGGAAAATATTAATTCCCAGTATCAGCAGATAGTCAGAGTCATGCCACCATGGACTGCAATTGACCATTCTGTTATGATGAGTAGCCCTTATCCATATCCAGTTCCTATACCAATCCCGCCTGCACCGGTTTCCATTCACCCACCTCTGCAACCTTTCCCTTACTTTGTAAACCAAAATCCTGGTCATATTCCAAGTCTATGCTCAATGTATATGCCATTCTCGGCGCCGGCTATTCCCCCGGTTGAGATGCCATCAGCTCAGTATGCTTCTACATTCCACATGTTTAGTCGAAAAGAGTCTCAAAGCAAGTCACCGGGTCATAAAAGAAGACCTAATGATGCAGACAGATGTAGTGTGTCTCCTGATGTGGCAACAGAACTTGAACTTAAGATGCCTGGATCATCAACACAACAGGATTGCACATCTAAAGGAAAAAAGGGCAAGCATTCAGTGATGAGTGATAGAATCATCATCGATGAGAGTGCCTCGAGTCAGGATTCTCCATCTCAGGGACTTCAAGATAGCTCCAACAGCATTGGCGACACCCCAAAGGCCGTTGATTGA 999 0.4535 MNQWKPPPPSPPPLNSSKTPSSTASDSPTQHITNRSNRKDTVRKRSEMEGGDPTAARKVKKADREKIRRDRLNDSFHQMGRTLDPDRPQNDKATIMTETIQVLKDTTAKVDRLKTEHKSNSEESQELIQEINDLREETASLKSDVENINSQYQQIVRVMPPWTAIDHSVMMSSPYPYPVPIPIPPAPVSIHPPLQPFPYFVNQNPGHIPSLCSMYMPFSAPAIPPVEMPSAQYASTFHMFSRKESQSKSPGHKRRPNDADRCSVSPDVATELELKMPGSSTQQDCTSKGKKGKHSVMSDRIIIDESASSQDSPSQGLQDSSNSIGDTPKAVD* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2960 332 MobiDBLite consensus disorder prediction 245 261 - -
Tpr1g2960 332 Coils Coil 103 151 - -
Tpr1g2960 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 54 126 IPR036638 GO:0046983
Tpr1g2960 332 MobiDBLite consensus disorder prediction 1 16 - -
Tpr1g2960 332 PANTHER TRANSCRIPTION FACTOR BHLH11 30 330 - -
Tpr1g2960 332 MobiDBLite consensus disorder prediction 1 92 - -
Tpr1g2960 332 Pfam Helix-loop-helix DNA-binding domain 57 105 IPR011598 GO:0046983
Tpr1g2960 332 MobiDBLite consensus disorder prediction 302 332 - -
Tpr1g2960 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 56 106 IPR011598 GO:0046983
Tpr1g2960 332 MobiDBLite consensus disorder prediction 17 35 - -
Tpr1g2960 332 MobiDBLite consensus disorder prediction 241 332 - -
Tpr1g2960 332 Gene3D - 55 157 IPR036638 GO:0046983
Tpr1g2960 332 PANTHER TRANSCRIPTION FACTOR BHLH121 30 330 IPR044579 GO:0003700|GO:0055072
Tpr1g2960 332 MobiDBLite consensus disorder prediction 36 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2960 Tpr-Chr1 33965861 33973146 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2960 54 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 45.902 1.34e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g2960 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2960 - - cam:101509613 367.081