Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2948 ATGGGTTTTGGAGTTTCATACGTTGTTCATGTCCTTGTGTTGTTTTCTGTTATGTTTGTTTGTGCATGGTCACAATCACAAGATGATGGTGCTGTGATGCAAAAGCTGAAAACTGCAATATCAAAAAGTAATCTTAATTGGTCAGACGATGATTTTTGCAATTGGGAAAAAGTTCAGTGTAGTGGACGTAGGGTGACTTCAATTGAAATTCCACAGAATCACAATGTTGAAGGTTCTTTACCAAAAGAATTGGTGCAACTCACTGAGTTAACTGATTTTCGTTGCACTGGAAATGATTTATCTGGAGTTGTCCCTTACATGCCAAATTCCCTTCAGAATTTGTATATTGACAACAACACATTCACTTCCATGCCAAATGATTTCTTCAATAACCTGACTAATTTGATAGAGGTAGGAATTGGTTATAACCCTTTTCCTCAATGGCAAATTCCTTCTAGTCTTAAGAATTGTTTAGCCCTTAAGAAGTTTTCTGCTAATAATGCTAGTTTTGTTGGTCAAATTCCTGAATTCTTTGGAACAGTAACTTTTCCAAGTTTGACTGATTTATTGCTAGCTTACAATTCTCTTGATGGTAATTTGCCTAATAGTTTATCTGGTAGTTCTATACAGACCCTTTGGGTCAATGGTCAAAATAGTATTAATAAACTCAATGGTACACTTTCTGTTTTACAAAATATGACTTCATTGCAACAAATTTGGGTTCAAAGTAATAATTTTACTGGTCCTATACCTGATTTATCAAATCTTGATCAATTAGTTAGTGTTAGTTTTAGGGATAATCAGTTAACTGGTGTTGTTCCAGCCTCTTTAACTTCCCTTCAGAGTTTGAAAAATGTGGGACTGTCAAACAATAATCTTCAAGGGTCACGTCCTAAGTTTAGTGATGGTGTTGAGGTTGACATGGGTTATGGGAATAACTTTTGCACTAAGAATGTTGGTGAACCATGTAGTCCACTTGTTAATGTTTTGCTTTCTGTTGTTGAACCTTTGGGTTATCCTCTCATACTTGCTCAAAGTTGGAAAAGTAATGACCCTTGTGATGGTTCTTGGTCCCCATACATTACTTGTTCTAACGGTAACATCACCACTATCAACTTTCAAAACAAGGGTTTTTCTGGTAGTATATCTCCTAGTTTTGCAAGTCTTACTTCTGTGACGAGGTTGCTTCTTGCTAAAAATAATCTCACCGGTACCATACCTAAGGAACTTGCTAGTATGCCGGCTCTGAAAGAGCTAGATGTTTCCAATAATAAGTTATATGGTCAGATACCTTCGTTTCGTGCAGGTGTGGTTGTTAACACCAATGGGAATCCTGATATCGGAAAGGATAAACCTCACGGGTCGCCCGACTCTAGTTCTGGAGGGGAAGATAAGAAGAAAAATGGTGTTGGAGCTATTATTGGTGTTGTTATGGGGATTATTGGCTTACTGGTTGTAGGGGTTTCGGTATTTGTTATTTGTCGTAGAAGACATAATAAGCGCGATGGAAAAGTTCAAACTCCAAATGCAATAGTAGTACATCCTCATCATTCTGGAGATGGAAATGCTGTGAAGATAAGTGTTGCAGCATCTGGAATTGCTGGTGCCGGCATTGCAGGAGGAACCAGTGGATTTAGTCCATCGAGTAGTGTTCAAAATGTGGAAGCTGGTAATATGGTCATTTCAATTCAAGTTTTGAGAGAAGTTACGGATAATTTTAGCGAAAAGAACATATTGGGGAAGGGAGGTTTTGGCACTGTATACAAAGGAGAATTGGCCGATGGAACGAAGATCGCAGTTAAAAGGATGCAATCTGAAATGGTTGGTGACAAAGGGCTGAATGAGTTCAAATCTGAAATTGCGGTTCTTACTAAGGTTCGACACAGGCATTTGGTCGGACTTCTCGGCTATTGCTTGGAAGACAATGAGAAACTTCTTGTCTATGAATACATGCCTCAGGGGACTCTTAGTGAACATCTGTTTGACCGAAAAGATGACGGGTCAAAACCGCTTGACTGGAAAACAAGGCTCTCCATTGCCTTGGACGTTGCTAGAGGTGTTGAATACCTTCATGGTTTGGCTCAGCATAGTTTTATCCACAGGGATCTGAAACCGTCAAACATCTTGCTTGGTGATGATATGCGCGCTAAAGTATCCGACTTTGGATTGGTTCGACTTGCTCCTGAAGGACAAGCCTCATTCGAGACTAGACTGGCCGGAACTTTTGGATATCTAGCACCAGAGTATGCAGTCACCGGACGTGTCACCACAAAGGTCGATGTATACAGCTACGGCGTGATTCTTATGGAGATTATAACCGGAAGGAGAGCAATTGACAACAGCCAACCAGAGGAAAATATGCACCTTGTTACATGGTTCCGCAGGATTCTACTGAACAAAGACTCGTTCGGAAAGGTCATTGATCCAGCAATGGACATCAATGAGGAAGGCTTGGAGAGTTTCAGGGATATTGCAGGGTTGGCAAGCCACTGTTGTGCAAGAGAGCCGCATCAGCGTCCCGAAATGGGACAGATAGTAAATGTGTTAGCACCTCTTGTCGAGATTTGGAAGCCGGCTGAACTTGATGACGATGACATATATGGGATTGACTTGGAAATGAGTTTGCCTCAAGTACTAAGTAAGTGGAAGAACCTTGAAGGAATGAGCAACACACTCGATGCTTCTTCATCGATGAGTGCTAATATTGAAAATACACAATCAAGTATACCAGCTCGGTCTTCCTATCCTTTTACATCTGCAGAGGCGCGATGA 2772 0.4055 MGFGVSYVVHVLVLFSVMFVCAWSQSQDDGAVMQKLKTAISKSNLNWSDDDFCNWEKVQCSGRRVTSIEIPQNHNVEGSLPKELVQLTELTDFRCTGNDLSGVVPYMPNSLQNLYIDNNTFTSMPNDFFNNLTNLIEVGIGYNPFPQWQIPSSLKNCLALKKFSANNASFVGQIPEFFGTVTFPSLTDLLLAYNSLDGNLPNSLSGSSIQTLWVNGQNSINKLNGTLSVLQNMTSLQQIWVQSNNFTGPIPDLSNLDQLVSVSFRDNQLTGVVPASLTSLQSLKNVGLSNNNLQGSRPKFSDGVEVDMGYGNNFCTKNVGEPCSPLVNVLLSVVEPLGYPLILAQSWKSNDPCDGSWSPYITCSNGNITTINFQNKGFSGSISPSFASLTSVTRLLLAKNNLTGTIPKELASMPALKELDVSNNKLYGQIPSFRAGVVVNTNGNPDIGKDKPHGSPDSSSGGEDKKKNGVGAIIGVVMGIIGLLVVGVSVFVICRRRHNKRDGKVQTPNAIVVHPHHSGDGNAVKISVAASGIAGAGIAGGTSGFSPSSSVQNVEAGNMVISIQVLREVTDNFSEKNILGKGGFGTVYKGELADGTKIAVKRMQSEMVGDKGLNEFKSEIAVLTKVRHRHLVGLLGYCLEDNEKLLVYEYMPQGTLSEHLFDRKDDGSKPLDWKTRLSIALDVARGVEYLHGLAQHSFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQASFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEIITGRRAIDNSQPEENMHLVTWFRRILLNKDSFGKVIDPAMDINEEGLESFRDIAGLASHCCAREPHQRPEMGQIVNVLAPLVEIWKPAELDDDDIYGIDLEMSLPQVLSKWKNLEGMSNTLDASSSMSANIENTQSSIPARSSYPFTSAEAR* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2948 923 SUPERFAMILY L domain-like 43 433 - -
Tpr1g2948 923 Pfam Protein tyrosine and serine/threonine kinase 576 848 IPR001245 GO:0004672|GO:0006468
Tpr1g2948 923 PANTHER OSJNBA0070M12.3 PROTEIN 1 923 - -
Tpr1g2948 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 698 710 IPR008271 GO:0004672|GO:0006468
Tpr1g2948 923 Gene3D Transferase(Phosphotransferase) domain 1 651 864 - -
Tpr1g2948 923 SUPERFAMILY Protein kinase-like (PK-like) 561 874 IPR011009 -
Tpr1g2948 923 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 1 923 - -
Tpr1g2948 923 Gene3D Phosphorylase Kinase; domain 1 542 650 - -
Tpr1g2948 923 ProSiteProfiles Protein kinase domain profile. 573 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2948 923 CDD STKc_IRAK 579 852 - -
Tpr1g2948 923 Gene3D Ribonuclease Inhibitor 26 322 IPR032675 -
Tpr1g2948 923 SMART serkin_6 573 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2948 923 MobiDBLite consensus disorder prediction 443 465 - -
Tpr1g2948 923 MobiDBLite consensus disorder prediction 450 464 - -
Tpr1g2948 923 Gene3D Ribonuclease Inhibitor 326 451 IPR032675 -
Tpr1g2948 923 ProSitePatterns Protein kinases ATP-binding region signature. 579 601 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2948 Tpr-Chr1 33848339 33852446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2948 73 855 Receptor kinase-like Gene Family AT5G07280 32.152 4.56e-86 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Tpr1g2948 Pkinase 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2948 - K00924 gmx:100776064 1157.13