Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2947 ATGGGTTTTGGAGTTTCCTACGCTGTTCATGTCCTTGTGTTGTTTTCTGTTATGTTTGTTTGTGCATGGTCACAATCACAAGATGATGGTGATGGTGCTGTGATGCAAAAGCTGAAAACTGCACTATCAAAAAGTAATCTTGATTGGTCAGACCCAAATTTTTGCAATTGGAAGGAAGTTCAGTGTAGTGGAAGGAGAGTCACTTCAATTGTAATTCCGGGGAAACTCAATATTGAAGGTTCTTTACCACAAGAATTGGCAAAACTCAGTGAGTTAACTACTTTTGATTTCAGGCAAAATAGTTTATCTGGAAATGTTCCTTACATGCCAAATTCACTTCAGTATTTGCATATTAACAATAACAATTTCACTTCCATGCCAAATGATTTCTTCAATAACCTCACTAATTTGATAGAGGTAGGAATTGATTATAACCCTTTTCTTCAATGGAAAATTCCTTCTAGTCTTAAGAATTGTTTAGCCTTGCAAAAAATTTCTGCTATGAAAGTTAATTTTGTTGGTGAAATTCCTGAATTCTTTGGAACGTTTTCAAGTTTGATTTATTTGCAGTTGTCTTTTAATTCTCTTGAAGGTAATTTGCCTAGTAGTTTATCTGGTAGTTCTATACAGTTCCTTTGGGTGAATGGTCAAAATAGTATTAATAAACTCAATGGTACACTTTCTGTTTTACAAAATATGACTTCATTGCAACAAATTTGGGTTCATGGCAATTTGTTTACCGGTCCTATACCTGATTTTTCAAATCTCGATCAATTGTATGATGTTAGTTTGAGGGATAATAAGTTAACCGGTGTTGTTCCACCGTCTTTAACTTCCCTTCAGAGTTTGAAAGTTGTGAATTTGACAAACAATGATCTTCAAGGTTCACCTCCTAAGTTTCAAGATGGCGTTCAGGTTGATATGGATTTGATTAGAGGGACTAATAGCTTTTGCACCAAGGTTGTTGGTCAACCATGTAGTCCACTTGTTAATGCTTTGCTTTCTGTTGCTGAAGCTTTTGGTTATCCTTTTAAACTTGCTGAAAGTTGGCAAGGTAATAGCCCTTGTAATGGCACTAATTGGGAAGGGATTCCTTGTTCTTCTGGTGGTAACATTAGCACTATCGACTTTCGAAACAAAGGTTTTTCTGGCAGTATATCTCCTAGTTTTGCAAGTCTTACTTCTGTGACGAAGTTGCTTCTTGCTAACAATAATCTCACAGGTACCATACCTAAGGAACTTGCTAGTATGCCGGCTCTGAAAGAGCTAGATGTTTCCAATAATTCGTTATATGGTCAGATACCTTCGTTTCGTGCAGGTGTGATTGTTAACACCAATGGGAATCCTGATATCGGAAAGGATAAACCTCACGGGTCTCCCGGCTCTAGTTCTGGAGGGGAACATAAGAAGAAACTTGCTGTTGGAACTATTATTGGTGTTGTTATTGGGATTGTTGGCTTACTTGGTGTAGGGGTTTTGGTATTTGTTATTTATCGTAGAAGACATAATAAGCATGATGGCAAAGATCAAACACCAAATGCAATAGTCGTACATCCTCGTCATTCTAGAGATGGAAATGCTGTGAAGATAAGTGTTGCAGCATCTGGAAGTGCTGGTGCTGGCATTGCAGGAGGAACCAGTGGATTTAGTCCACCGAGCAGTGTTCAAAATGTGGAAGCTGGTAATATGGTCATTTCAATTCAAGTTTTGAGAGAAGTTACAAACAATTTTAGCGATGAGAACATATTGGGGAAGGGAGGTTTTGGCACTGTATACAAAGGAGAATTGGACGATGGAACAAAGATTGCGGTTAAAAGGATGCAATCTGAAATGGTTGGTGGCCAAGGGTTGGATGAGTTCAAATCTGAAATTGCGGTGCTTACTAAAGTTCGACACAGGCATTTGGTTGCACTCCACGGCTATTGCTTGGAGGACAATGAGAAACTTCTTGTTTATGAATACATGCCTCAGGGGACACTTAGTCAACATCTGTTTGACTGGGAAGATGACGGCTCAAAACCGCTTGAATGGAAGAGACGGCTCTCTATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCACATCAAATTTTCATCCACAGGGATCTGAAACCATCAAATATCTTGCTTGGGGATGATATGCGCGCTAAAGTATCCGACTTTGGATTGGTTCGACTTGCTCCAGAAGGACAAGCCTCATTCCAGACTAGACTTGCCGGAACTTTTGGATATCTAGCACCAGAGTATGCAGTAACTGGACGAGTCACCACAAAGGTTGACATATACAGCTACGGCGTGATTCTTATGGAGATGATAACCGGAAGAAGAGCAATTGAGAACAGCCAACCAGAGGAGAACATCCACCTTGTTGCATGGTTCCGCAGGATGCTATTGAACAAAGACTCGTTCAATAAGGTCGTTGATCCAGCACTGAATATCAATGAGGAAGGCTTGAAGAGTTTCTGGACTATTGCAGAATTGGCCAGCCAGTGTTGTGCAAGAGAGCCTCATCATCGCCCCAACATGGGACACATTGTGAACATCCTAGCACCTCTTGTTGAAATTTGGAAGCCAGCTGAACCTGATGCTGATGACATGTATGGGATTGACTTCGATATGAGTTTGCCTCAAGCATTAAATAGGTGGCAGAATCTTGAAGAAATGAGCAAGACACTCGATATTTCGTATTCTTCATCGATGGTTGATAGTTGTGAGAATACACAGTCAAGTATACCGCCTCGGTCTCCTGGATTTGCTAATTCCTTTACATCTACTGATGCGCGATGA 2799 0.4019 MGFGVSYAVHVLVLFSVMFVCAWSQSQDDGDGAVMQKLKTALSKSNLDWSDPNFCNWKEVQCSGRRVTSIVIPGKLNIEGSLPQELAKLSELTTFDFRQNSLSGNVPYMPNSLQYLHINNNNFTSMPNDFFNNLTNLIEVGIDYNPFLQWKIPSSLKNCLALQKISAMKVNFVGEIPEFFGTFSSLIYLQLSFNSLEGNLPSSLSGSSIQFLWVNGQNSINKLNGTLSVLQNMTSLQQIWVHGNLFTGPIPDFSNLDQLYDVSLRDNKLTGVVPPSLTSLQSLKVVNLTNNDLQGSPPKFQDGVQVDMDLIRGTNSFCTKVVGQPCSPLVNALLSVAEAFGYPFKLAESWQGNSPCNGTNWEGIPCSSGGNISTIDFRNKGFSGSISPSFASLTSVTKLLLANNNLTGTIPKELASMPALKELDVSNNSLYGQIPSFRAGVIVNTNGNPDIGKDKPHGSPGSSSGGEHKKKLAVGTIIGVVIGIVGLLGVGVLVFVIYRRRHNKHDGKDQTPNAIVVHPRHSRDGNAVKISVAASGSAGAGIAGGTSGFSPPSSVQNVEAGNMVISIQVLREVTNNFSDENILGKGGFGTVYKGELDDGTKIAVKRMQSEMVGGQGLDEFKSEIAVLTKVRHRHLVALHGYCLEDNEKLLVYEYMPQGTLSQHLFDWEDDGSKPLEWKRRLSIALDVARGVEYLHGLAHQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQASFQTRLAGTFGYLAPEYAVTGRVTTKVDIYSYGVILMEMITGRRAIENSQPEENIHLVAWFRRMLLNKDSFNKVVDPALNINEEGLKSFWTIAELASQCCAREPHHRPNMGHIVNILAPLVEIWKPAEPDADDMYGIDFDMSLPQALNRWQNLEEMSKTLDISYSSSMVDSCENTQSSIPPRSPGFANSFTSTDAR* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2947 932 SUPERFAMILY L domain-like 331 437 - -
Tpr1g2947 932 Gene3D Phosphorylase Kinase; domain 1 548 654 - -
Tpr1g2947 932 Gene3D Ribonuclease Inhibitor 30 324 IPR032675 -
Tpr1g2947 932 Pfam Leucine rich repeat N-terminal domain 331 367 IPR013210 -
Tpr1g2947 932 Pfam Leucine rich repeat N-terminal domain 29 63 IPR013210 -
Tpr1g2947 932 PANTHER OSJNBA0070M12.3 PROTEIN 1 932 - -
Tpr1g2947 932 ProSiteProfiles Protein kinase domain profile. 577 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2947 932 Pfam Protein kinase domain 578 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2947 932 CDD STKc_IRAK 583 856 - -
Tpr1g2947 932 MobiDBLite consensus disorder prediction 448 468 - -
Tpr1g2947 932 Pfam Leucine Rich repeats (2 copies) 394 434 IPR025875 -
Tpr1g2947 932 SUPERFAMILY L domain-like 45 302 - -
Tpr1g2947 932 Gene3D Transferase(Phosphotransferase) domain 1 655 868 - -
Tpr1g2947 932 ProSitePatterns Serine/Threonine protein kinases active-site signature. 702 714 IPR008271 GO:0004672|GO:0006468
Tpr1g2947 932 Gene3D Ribonuclease Inhibitor 329 455 IPR032675 -
Tpr1g2947 932 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 1 932 - -
Tpr1g2947 932 SMART LRR_typ_2 417 439 IPR003591 -
Tpr1g2947 932 SMART LRR_typ_2 183 207 IPR003591 -
Tpr1g2947 932 SMART LRR_typ_2 280 302 IPR003591 -
Tpr1g2947 932 SMART LRR_typ_2 393 416 IPR003591 -
Tpr1g2947 932 SMART LRR_typ_2 109 133 IPR003591 -
Tpr1g2947 932 SUPERFAMILY Protein kinase-like (PK-like) 565 891 IPR011009 -
Tpr1g2947 932 ProSitePatterns Protein kinases ATP-binding region signature. 583 605 IPR017441 GO:0005524
Tpr1g2947 932 SMART serkin_6 577 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2947 932 MobiDBLite consensus disorder prediction 909 932 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2947 Tpr-Chr1 33842917 33847030 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2947 77 859 Receptor kinase-like Gene Family AT5G07280 31.181 1.37e-85 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Tpr1g2947 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2947 - K00924 gmx:100776064 1188.71