Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2936 ATGGTTTTCGATGGAAATAACAATGCAACAAAACTCAACACTCGGAAGAGAAAATTTGGTGAAATCAAGAAAACGGAAAAATCAAACAAGTCTCAAATGATGTTCTCAAATTGTATACTCGGACTTTTCAACAAAGCAACTGAGCTCTCTGTTCTATGCAAAGCAAAAACTGCACTCATTATTACATCACCCAACAATGAGCTCTATACATGTGGCTATCCTAATTGCGACGCCATCATTCAACAATTCTTGACCGGAAAAGATACCATTGAAGACAGCGAGATAAAGAAGCAAGAGGAGATTGTTGAAACCTTAAGGCTTGAGTATGAGGCAATTGGAGATAAACTTAAGAAACTTTTGGAAGAAGAAAAGAATTGGCAAGCTATCAATGATGAGGCAGAGAAGAGTGGTTCGATTTCCTCTTGTTGGTGGAATGATCCTATTGATGATATGGATTTACAATCTCTTGAGGAATTTAAGACTTATTTGGAAAAGTTGAGACTTAATTTAGGTTCAGCCAATGACGAAAAGAAGTTAATGTCCACACTTCGATCTTGA 558 0.3674 MVFDGNNNATKLNTRKRKFGEIKKTEKSNKSQMMFSNCILGLFNKATELSVLCKAKTALIITSPNNELYTCGYPNCDAIIQQFLTGKDTIEDSEIKKQEEIVETLRLEYEAIGDKLKKLLEEEKNWQAINDEAEKSGSISSCWWNDPIDDMDLQSLEEFKTYLEKLRLNLGSANDEKKLMSTLRS* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2936 185 Coils Coil 102 136 - -
Tpr1g2936 185 Coils Coil 156 176 - -
Tpr1g2936 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 70 IPR002100 GO:0003677|GO:0046983
Tpr1g2936 185 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Tpr1g2936 185 SUPERFAMILY SRF-like 17 85 IPR036879 GO:0003677|GO:0046983
Tpr1g2936 185 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Tpr1g2936 185 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Tpr1g2936 185 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Tpr1g2936 185 Gene3D - 11 110 IPR036879 GO:0003677|GO:0046983
Tpr1g2936 185 SMART madsneu2 14 74 IPR002100 GO:0003677|GO:0046983
Tpr1g2936 185 PANTHER MADS BOX PROTEIN 11 181 - -
Tpr1g2936 185 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 11 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2936 Tpr-Chr1 33728559 33729116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2936 14 167 Type I MADS-box Gene Family AT5G60440 29.375 1.51e-17 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr1g2936 SRF-TF 7.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2936 - - cam:101507050 175.252