Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2926 ATGGCTATGGATGAAGTGGATAGTAGCTCGGAGTGGAGCAGGGAGCAAGACATAGCATTTGAAAATGCCTTGGCGACTTATCCTGAGGATGCTTCGGATCGATGGGAGAAGATTGCGGCTGATGTACCGGGGAAGACTGTGGAAGAAATTAAAGAGCATTATGAGCTCTTGGTTGATGATGTTAGCCAGATTGAAGCTGGTTGTGTGCCTTTACCGTCGTATAATTCTTCTTCGGAGGGATCAACAGGTCAAGCTAGCGATGAAGGAGTTGGGGGGAAAAAGAATGGGCACAATAACGAGTCTAACCATGGAACTAAGGCTTCAAGATCGGATCAAGAACGACGGAAGGGTATTGCTTGGACTGAGGAAGAGCACAGGTTATTTCTTCTGGGCCTGGACAAGTACGGAAAAGGCGACTGGCGAAGTATATCACGGAACTTTGTGGTGACCCGAACACCAACACAAGTAGCAAGCCACGCCCAAAAATACTTCATTCGATTGAACTCAATGAACAAAGACCGACGGCGATCGAGCATACATGATATTACAAGTGTTAACAATGGAGATGTTTCAACACCTCAAGGACCAATCACCGGTCAAACGAACGGTTCCGCTGGAAATTCTGCAAGCAAATCAGTTAAACAAATTTCTCCGTCCACAACCGGGATACCAGGTTCAGGAATATATGCCGCCCCAACCATCGGACAACCTGTCGGAGGACCTTTAGTATCTGCTGTTGGCACCCCTGTGAATCTTTCTGCACCTCCACACATGGCGTATGGTATTCGAGCACCGGTTCCTGGCACCGTTGTACCTGGCGCACCGATGAACATGGTCCCTATGACATACCCTATGCCTCATAGTCATACTTCTGCTCCTCACAGGTGA 888 0.482 MAMDEVDSSSEWSREQDIAFENALATYPEDASDRWEKIAADVPGKTVEEIKEHYELLVDDVSQIEAGCVPLPSYNSSSEGSTGQASDEGVGGKKNGHNNESNHGTKASRSDQERRKGIAWTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSTPQGPITGQTNGSAGNSASKSVKQISPSTTGIPGSGIYAAPTIGQPVGGPLVSAVGTPVNLSAPPHMAYGIRAPVPGTVVPGAPMNMVPMTYPMPHSHTSAPHR* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2926 295 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 116 166 IPR006447 GO:0003677
Tpr1g2926 295 CDD SANT 11 58 IPR001005 -
Tpr1g2926 295 MobiDBLite consensus disorder prediction 74 116 - -
Tpr1g2926 295 MobiDBLite consensus disorder prediction 181 197 - -
Tpr1g2926 295 Gene3D - 10 57 - -
Tpr1g2926 295 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Tpr1g2926 295 CDD SANT 119 164 IPR001005 -
Tpr1g2926 295 ProSiteProfiles SANT domain profile. 7 57 IPR017884 -
Tpr1g2926 295 MobiDBLite consensus disorder prediction 174 197 - -
Tpr1g2926 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 168 IPR017930 -
Tpr1g2926 295 SUPERFAMILY Homeodomain-like 114 169 IPR009057 -
Tpr1g2926 295 Gene3D - 118 170 - -
Tpr1g2926 295 SMART sant 8 60 IPR001005 -
Tpr1g2926 295 SMART sant 116 166 IPR001005 -
Tpr1g2926 295 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Tpr1g2926 295 Pfam Myb-like DNA-binding domain 119 164 IPR001005 -
Tpr1g2926 295 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 7 281 - -
Tpr1g2926 295 ProSiteProfiles Myb-like domain profile. 112 164 IPR001005 -
Tpr1g2926 295 ProSiteProfiles SANT domain profile. 120 168 IPR017884 -
Tpr1g2926 295 PANTHER TRANSCRIPTION FACTOR KUA1 7 281 - -
Tpr1g2926 295 SUPERFAMILY Homeodomain-like 10 65 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2926 Tpr-Chr1 33574025 33580692 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr1g2926 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2926 - - ccaj:109792793 508.449