Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2900 ATGTCTACTCGTCCTTCTTTTCACAAGATTATTCTTCCAACAACCCTTCAATCTAGACAACTGAGGATTCCGGATAACTTTCTGAAGAAACATGGGTCCCAGCTTTCGTCTTATGCAACCGTTACTGTTCCTGATGGTGCTGTCTGGCGTATAGGATTGAAAAAGGTCGACAACAGAATTTGGTTGAGTGATGGTTGGCAGGAATTTGTTCAACGCTACTCCATTGGCATTGGATACTTTCTAGTATTCATGTATGAAGGGAATTCAACCTTCATCGTTCATATGTTTAATATGAGTACTGCTGAGTTAAACTATCAATCAACCATGAGAAGCCATAACGAAGGGTATTCAAATTATCTTCCTATTTTTGGAGAAATGGAAGATATTGACTCCTTTGAATTCCTGGATTCATCACCTTCAAACCTTACGCCTGGTGCTATGGATCAACTGACACCAGGGAAGAATCATACTCCATCATTGCAGAATTTGTTTAATGGCGGGTCTAAACTTAACCGCGTTAACTGGGGAGATATCGGTGGTACTCTGTCTTCAAAGGTTGCCATTCAGTCAACCAAAGATGTAGGTGTTCAGTTCAATGCTAATGAGTTCAAAAAGTCTACTGAAGAAGTGAAATTGCGCTATACTAACGAGGACGGGCTTAATAATAGTGATACTAAGAAAACTCCAAGAAGGAAGCGGAAATTAGATCCAAGTGCACAGGAAGCCGCTGCTGAAAATGATGAGGATGGAGATATACGCTATCGATTCTATGAAAGTGCATCTGCAAGAAAAAGAATCGTGACAGCAGAAGAAAGAGAAAGGGCAATTAATGAGGCAAAAACATTTGAACCAACTAATCCTTTCTGTCGAGTTGTCCTGCGACCCTCCTATTTATATAGGGGATGCATAATGTATTTGCCATCCTGCTTTGCAGAAAAGAATTTGAATGGTGTTTCAGGATTCATTAAGCTTCAGACCACCGATGCGAGACAGTGGCCTGTTCGATGCCTCTATAGAGGAGGCCGAGCAAAGTTAAGTCAAGGATGGTATGAATTTACAGTAGAGAACAATTTAGGGGAAGGTGATGTCTGTGTTTTCGAGCTGCTCAGAACCAGAGATGTAGTGCTGCAAGTTACTTTGTTTCGTGTAAAAGAGGATGAATCAGGGTTATTCAACCCTTCTATGCAGCCGATCCAAAATGTGAGCCATGCGAAACTGTTGAACCCTCATTTGCAGCACCGTGTTAGCTCAACTAAATCAGCTAAAGTTTAG 1272 0.4127 MSTRPSFHKIILPTTLQSRQLRIPDNFLKKHGSQLSSYATVTVPDGAVWRIGLKKVDNRIWLSDGWQEFVQRYSIGIGYFLVFMYEGNSTFIVHMFNMSTAELNYQSTMRSHNEGYSNYLPIFGEMEDIDSFEFLDSSPSNLTPGAMDQLTPGKNHTPSLQNLFNGGSKLNRVNWGDIGGTLSSKVAIQSTKDVGVQFNANEFKKSTEEVKLRYTNEDGLNNSDTKKTPRRKRKLDPSAQEAAAENDEDGDIRYRFYESASARKRIVTAEERERAINEAKTFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQTTDARQWPVRCLYRGGRAKLSQGWYEFTVENNLGEGDVCVFELLRTRDVVLQVTLFRVKEDESGLFNPSMQPIQNVSHAKLLNPHLQHRVSSTKSAKV* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2900 423 PANTHER B3 DOMAIN-CONTAINING 4 413 - -
Tpr1g2900 423 CDD B3_DNA 5 97 IPR003340 GO:0003677
Tpr1g2900 423 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Tpr1g2900 423 Pfam B3 DNA binding domain 13 97 IPR003340 GO:0003677
Tpr1g2900 423 Pfam B3 DNA binding domain 292 382 IPR003340 GO:0003677
Tpr1g2900 423 SUPERFAMILY DNA-binding pseudobarrel domain 3 98 IPR015300 -
Tpr1g2900 423 SMART B3_2 289 384 IPR003340 GO:0003677
Tpr1g2900 423 SMART B3_2 7 99 IPR003340 GO:0003677
Tpr1g2900 423 MobiDBLite consensus disorder prediction 223 247 - -
Tpr1g2900 423 MobiDBLite consensus disorder prediction 214 247 - -
Tpr1g2900 423 ProSiteProfiles B3 DNA-binding domain profile. 289 384 IPR003340 GO:0003677
Tpr1g2900 423 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 4 413 - -
Tpr1g2900 423 CDD B3_DNA 287 382 IPR003340 GO:0003677
Tpr1g2900 423 Gene3D - 266 386 IPR015300 -
Tpr1g2900 423 SUPERFAMILY DNA-binding pseudobarrel domain 282 383 IPR015300 -
Tpr1g2900 423 Gene3D - 1 100 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2900 Tpr-Chr1 33375012 33378776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2900 4 385 B3 DNA Binding Superfamily AT3G18990 50.777 2.99e-128 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2900 B3 2.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2900 - - gmx:100789352 631.328