Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2897 ATGGAACAAGACGATGACAACAACAAAAAAAGCATTGCTGAGAGAAGGGGTTTCAATAACAATGTTGCAAAGATCAACACAAGAATTTCTCATTTTAGTGCAACAACCTCTTTGGTTTCTCCTGCACCTCAATCAGCACGTTTCACAATACCACCTGGAATTAGTCCAACTGCTTTGCTTGAATCCCCAATCATGCTCCCTAATTCTATGGTCATGCCATCTCCCACCACTGGGAGTTTTGCCATGCTTCCACCTTTAACTGATGAAAGATCAATGCTCACTTCTGTCACACATGAACAAAGGAAATTGGATGTGCCTACTGCCTCTTTCAAATTCAAGTCTCAAGCCAACTTGGATCCTAATTCTTTGTCTCCATATTATGATTCTCTTAATCAGGTTTCTAGTAATTGCCATATGATGACTCAAGGACATAGAGACATCCAAATGGTTTTTCAGGATCAACAAGTGTTAGATTTTTCATTCTCAGAAGATTTTTCAAATGACTATTCAGCTAGCGACGAAAGCACTTTGCCTGAAAATTCTATCAACGACGATGATATTGGACAAAAACCTGATTTAGAGGATGAGCATAAAGAGATGACTCATGCAACAGGAGCAAAAACCTTAGAGGATGGTTATAATTGGAGAAAGTATGGACAAAAACAGGTCAAAGGAAGTGATTATCCAAGAAGCTACTATAAATGTACTCAGGCTAATTGTCAAGTCAAGAAAAAGGTGGAAAGATCGCACGACGGCCATATAACAGAAATTATTTATACTGGTAATCATAATCATGTAAAACCACATTCTAGTCGGCGAGGATCACCACCTTCAAATGATGAGAAATCAGAAATTGTTGAAACCAATGAAACATATGATAGAGCTGATGCTGATTCAGATGGAAAACACAATATGGAGTGGAAACTTGATGGTCAAGAAAGGATGTCTCTGCCTTTTACTGTGACCGGGCTTTCGAATCCTACAAAGAGAGTTAGATCTCTTGGTATGTCAGAATCGGACAACGCTCTAGAGCATTCTTCCGCGCATGCTAATCATGATGGTGATAAAGATGGAGCTACTCAAGCAGTTTTACCACCTCGAGGTGATACTGAAGAAGATGAATCAGAATCAAAGAGAAGGAAGCACGAGAGCTATCCAGTTCAAACAATGGTACCATCGAGGGCTATTCGTGAGCCACGAGTGGTAGTGCAAGTTGAGAGTGAAGTGGACATACTCGATGATGGTTACCGCTGGCGAAAGTATGGACAAAAGGTTGTCAAAGGAAATCCAAACCCAAGGAGTTACTACAAATGCACAACTTCTGGATGTACTGTAAGGAAACATGTGGAAAGGGCTGCACACAATATGAAATATGTCATTACTACTTATGAAGGAAAACATAATCATGATGTTCCAATTGCAAGAAACAACAATTATATAAGCGCAAACGATGCTGCTTTGCCTTCCCGTGGTGCTAATGTGCATGCCTCCGGTATCCCAAGGTCTGAAACTCATCAAACTCTTGCACCTCATTTTGATCGAAAACCAGATTCTACCAACGAGTTTCTGAGATCGAATTTAATGGGAAGTTTTAGTGACATGAATTTTGGACCTTCTTCCATATCCCAACTGAAGTATTCTTCATTGAATAGTATCTTACCATTTGGAGCCTATGGAACAAATCCTGAGCACGGAGTTGCGCCTCAAGCCGGACCTATTGCCTCAATTTTCCCTGACTTTCCGATGCCGCTACCAATGAATCTCCCCTCATCTGGAAATTTTTCTCTACCTGGAATTAATTTCAACTATGCACAACCAATGAATTCTGTCCAGTCTTACCTTTCAGGTCAACTTGTGATGGACATTGATGCAGGGTATCTAAGGCCTAAACAGGAGCTAAAGGATGAATCTTTATATGCTACATGTGCACCATCTCTTGATCATGCAAGTGCCTCATTCACTCCACCACCACCATCACAATCCACTTATCAAAGTGCCATGCAAAATTTCTCTTCATAA 2019 0.4052 MEQDDDNNKKSIAERRGFNNNVAKINTRISHFSATTSLVSPAPQSARFTIPPGISPTALLESPIMLPNSMVMPSPTTGSFAMLPPLTDERSMLTSVTHEQRKLDVPTASFKFKSQANLDPNSLSPYYDSLNQVSSNCHMMTQGHRDIQMVFQDQQVLDFSFSEDFSNDYSASDESTLPENSINDDDIGQKPDLEDEHKEMTHATGAKTLEDGYNWRKYGQKQVKGSDYPRSYYKCTQANCQVKKKVERSHDGHITEIIYTGNHNHVKPHSSRRGSPPSNDEKSEIVETNETYDRADADSDGKHNMEWKLDGQERMSLPFTVTGLSNPTKRVRSLGMSESDNALEHSSAHANHDGDKDGATQAVLPPRGDTEEDESESKRRKHESYPVQTMVPSRAIREPRVVVQVESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTSGCTVRKHVERAAHNMKYVITTYEGKHNHDVPIARNNNYISANDAALPSRGANVHASGIPRSETHQTLAPHFDRKPDSTNEFLRSNLMGSFSDMNFGPSSISQLKYSSLNSILPFGAYGTNPEHGVAPQAGPIASIFPDFPMPLPMNLPSSGNFSLPGINFNYAQPMNSVQSYLSGQLVMDIDAGYLRPKQELKDESLYATCAPSLDHASASFTPPPPSQSTYQSAMQNFSS* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2897 672 Gene3D WRKY domain 399 465 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr1g2897 672 SUPERFAMILY WRKY DNA-binding domain 405 472 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr1g2897 672 Pfam WRKY DNA -binding domain 210 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr1g2897 672 Pfam WRKY DNA -binding domain 413 469 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr1g2897 672 MobiDBLite consensus disorder prediction 274 302 - -
Tpr1g2897 672 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 173 633 IPR044810 GO:0003700
Tpr1g2897 672 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 8 202 IPR044810 GO:0003700
Tpr1g2897 672 SUPERFAMILY WRKY DNA-binding domain 205 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr1g2897 672 SMART WRKY_cls 412 471 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr1g2897 672 SMART WRKY_cls 209 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr1g2897 672 MobiDBLite consensus disorder prediction 367 385 - -
Tpr1g2897 672 MobiDBLite consensus disorder prediction 652 672 - -
Tpr1g2897 672 Gene3D WRKY domain 195 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr1g2897 672 MobiDBLite consensus disorder prediction 339 387 - -
Tpr1g2897 672 ProSiteProfiles WRKY domain profile. 204 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr1g2897 672 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 8 202 - -
Tpr1g2897 672 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 173 633 - -
Tpr1g2897 672 ProSiteProfiles WRKY domain profile. 407 472 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr1g2897 672 MobiDBLite consensus disorder prediction 258 302 - -
Tpr1g2897 672 MobiDBLite consensus disorder prediction 649 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2897 Tpr-Chr1 33347115 33352417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2897 12 475 WRKY Transcription Factor Family AT5G56270 42.000 3.83e-96 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tpr1g2897 WRKY 9.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2897 K18835 - gmx:100813723 756.133