Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2878 ATGGATCCCCAAAATTTTTACTTAATAGTCCTTGCCTCCTTTTTCATCTTCATGCTTGTGGCATTGAAAAAGAAAAAAGGCTCACCTGCAAACCTACCCCCAGGACCATGGAAGATACCTATTATAGGACATATTCACCATCTAGTTACCTCTACACCACATAGAAAACTAAGAGACTTGGCCAAAATACATGGACCCTTGATGCACCTACAACTTGGAGAGATCAATGCAATTGTTGTTTCCTCATCAGAGTATGCTAAAGAGGTACTTAAAACACATGATGTCATATTTGCATCTAGGCCTAAAATTATTGCCTTGGAAATACTATCTTATGGTTTCACAAATATTGGTTTTGCACCTTATGGAAATTATTGGAGACAACTACGAAAAATATGCGCAATGGAGCTTTTATCGCAAAATCGTGTGGGTTCATTTCAACCAATAAGAGAAGAAGTGTTCACCAATCTCATCAAAAGGATTGGTTCCAAACAAGGGTCATCAATCAACATCACTCAACTTGTGGTTGAATCAACATTTACTATCCTTTCAAGGTGTGCGTTTGGTGACAAATGCAAAGAAGAAGAAGAGTTTGCGTCGTTGGGGAGAGGAGAGTCAATTGCAGGAGGTTTTGACATAGCTGAACTGTTTCCTTCAGTTAAATGGCTTCAACTTGTTTCAGGTTTGAGGCCTAAACTTGAGAGGTTGCATAGACGAATTGATAAGATACTAGAAAACATCATCATTGAACATAAAGAAGCAAAGTTAAAAGCAAAAGAAGGCCAAGTTGAAGTAGAGGAAGATCTAGTAGATGTTCTTCTAAAATTCCAAGGTGGCAATGAAAGTGACAAAGATATATGCTTAACTAACAACAACATTAAGGCTGTAATCCTGGATATGTTTGGTGGCGGAGGTGATACGTCGGGTTCTACCATAGTTTGGGCAATGACGGAGCTGGCAAAGGAACCAAGAGTGATGAAAAAAGCACAAGATGAAGTGAGAGAAATATTCAACACGAAAGGAATTGTTGGTGAAAAATATATAAATGAGCTCGAATATTTGAAGTTAGTTGTGAAAGAGACCTTAAGGTTACACCCTCCGGCTCCTCTTTTAGTTCCAAGAGAATGTGGACAAGCATGTGAGATTGATGGGTATCATATACCAATAAACACTAAAGTGATAGTCAATGCATGGGCAATTGGAAGAGATCCAAAGTATTGGAATGAACCAGAGAGATTTTATCCGGAGAGGTTTATCGGTAGCTCTATGGACTACCAAGGGACTAATTTTGAGTATATTCCTTTTGGTTCTGGAAGAAGAATATGCCCAGGCATCATATTTGGTTTGACAAATGTTGAGTTGGTGCTTGCATTGATGTTGTATCACTTTGATTGGAAGCTTCCCAAAGGAATGAAAGGTGAGGACTTAGACATGACTGAAATATTTGGAGTTACCATCAAAAGAAAAGATGACTTGTACTTGATACCTACTGCTCATGTTCCTTCCAAGTGGTAG 1512 0.3862 MDPQNFYLIVLASFFIFMLVALKKKKGSPANLPPGPWKIPIIGHIHHLVTSTPHRKLRDLAKIHGPLMHLQLGEINAIVVSSSEYAKEVLKTHDVIFASRPKIIALEILSYGFTNIGFAPYGNYWRQLRKICAMELLSQNRVGSFQPIREEVFTNLIKRIGSKQGSSINITQLVVESTFTILSRCAFGDKCKEEEEFASLGRGESIAGGFDIAELFPSVKWLQLVSGLRPKLERLHRRIDKILENIIIEHKEAKLKAKEGQVEVEEDLVDVLLKFQGGNESDKDICLTNNNIKAVILDMFGGGGDTSGSTIVWAMTELAKEPRVMKKAQDEVREIFNTKGIVGEKYINELEYLKLVVKETLRLHPPAPLLVPRECGQACEIDGYHIPINTKVIVNAWAIGRDPKYWNEPERFYPERFIGSSMDYQGTNFEYIPFGSGRRICPGIIFGLTNVELVLALMLYHFDWKLPKGMKGEDLDMTEIFGVTIKRKDDLYLIPTAHVPSKW* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2878 503 Coils Coil 248 268 - -
Tpr1g2878 503 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 434 443 IPR017972 GO:0005506|GO:0016705
Tpr1g2878 503 Pfam Cytochrome P450 33 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tpr1g2878 503 Gene3D Cytochrome P450 17 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tpr1g2878 503 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tpr1g2878 503 PRINTS P450 superfamily signature 355 366 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tpr1g2878 503 PRINTS P450 superfamily signature 432 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tpr1g2878 503 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tpr1g2878 503 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tpr1g2878 503 PRINTS E-class P450 group I signature 177 195 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tpr1g2878 503 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tpr1g2878 503 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tpr1g2878 503 PRINTS E-class P450 group I signature 354 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tpr1g2878 503 PRINTS E-class P450 group I signature 395 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tpr1g2878 503 PRINTS E-class P450 group I signature 431 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tpr1g2878 503 PRINTS E-class P450 group I signature 441 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tpr1g2878 503 PANTHER CYTOCHROME P450 71B11-RELATED 11 499 - -
Tpr1g2878 503 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 11 499 - -
Tpr1g2878 503 SUPERFAMILY Cytochrome P450 33 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2878 Tpr-Chr1 33167230 33169411 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2878 5 495 Cytochrome P450 AT3G26310 40.882 7.34e-134 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2878 - - gmx:102665189 699.123