Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2876 ATGGCCATCTCCGAGTATTTTCCAGTCATAGGTGAATGGATAAAGAACATTTTCTTGGTGCTATTTGCACTTTCATTTTTTGGCGGTGGCATCTTCGTGTTAATCATCGTCTATGCCCCCTCTGATATCAAGTTCCATGTAACTGATGCATCACTCACAAAGTTCAACCTCACAAACAACAATACCTTGGATTACAAGTTAGAAGCAAATATCACTTCAAGAAATCCCAACAAGAATGTCATTGTGTACTACAGGGAGATCGCTGCAATTGCATTCTACAAAGATCATAAATTTGCTACTGTCAATTTGACACCTTTTGATCAAGGCCACAAGACTACCAGTTTTCTTCATGTACTGTTTGAAGGTATGGGTGTAATGAAGAACAGCCTCAAACCTAAACAACTTTTCGAATATGATCAAGAAACGCGTTTAGGGATCTATCATGACTTGGCTATAAATTTGGATATTTTAGCCACTTACAAGTTTCTAACACACAAGTCCACTCGCTACAATCCACCAATGGTGCAATGTCGTCGTTTGAGTCTTTCTTTGGTTTCTAACGGTAACTCGTCATCAACACCTTCTTTTCATGGTAGAAAATGTAGAATTAATCATTTCTTTGAAAATCGGTAG 633 0.3807 MAISEYFPVIGEWIKNIFLVLFALSFFGGGIFVLIIVYAPSDIKFHVTDASLTKFNLTNNNTLDYKLEANITSRNPNKNVIVYYREIAAIAFYKDHKFATVNLTPFDQGHKTTSFLHVLFEGMGVMKNSLKPKQLFEYDQETRLGIYHDLAINLDILATYKFLTHKSTRYNPPMVQCRRLSLSLVSNGNSSSTPSFHGRKCRINHFFENR* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2876 210 PANTHER HARPIN-INDUCED 1 30 203 - -
Tpr1g2876 210 PANTHER OS05G0367900 PROTEIN 30 203 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2876 Tpr-Chr1 33153614 33154246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2876 42 193 SNARE and Associated Proteins AT1G32270 33.333 2.34e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2876 - - gmx:100784278 189.504