Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2873 ATGGAAAAATTAGCTCCTCCTCTTCTTCCTCTTCATCCTCCTATGTTATCAAATCCATTTTATAATTCATCAAATAACAAAAAACGCGATCTATCATACGACGTCGTTCACATCCCAAACGACAATTGGAACCCTAAAGAATGGAATTGGGATTCAGTTCGATTCACCGCCAAATCAACCGTCTCACAACAACACCACACCGAAGAAACTCTCAAATTGAATCTCGGCGGCGCCGCTGTAAACGGCGGAGTTAACAGCGGAGTTAACAGCGGAGTTGTAAACAGAGCAAACAAACGAGTACGATCAGGATCTCCAACAGCATCATATCCGATGTGTCAAGTTGATAACTGTAAAGAAGATCTATCAAAAGCTAAGGATTATCATCGACGGCATAAAGTATGTGAAGCTCATAGTAAAGCTTCGAAAGCTTTGTTAGGGAATCAAATGCAACGGTTTTGTCAACAGTGTAGTAGGTTTCATCCTTTGTTGGAATTTGATGAAGGGAAAAGGAGTTGTAGAAGGAGACTTGCTGGACATAATCGTCGACGGAGAAAAACGCAGCCGGATGAGGTTGCTAATTCTTCTTCTCCTCCGTTGAATCAGCAAGTTGTGGCGGCTGCTGCTAATTTGGAAATTTTTAATTTGTTGACTGCTATTGCTGATGGTTCTCAAGGAAAATTTGAGGAAAGAAGGTCACAAGTTCCAGATAAAGAGCAGCTTGTTCAGATTCTGAATAGGATCCCTTTACCTGCTGATCTTACAGCGAAGTTGCTGGACGTTGGTAATAATTTGAAGGGGAAAAATGATAACGTTCCAATGCAAACTTCATCTCCGTATCATTATTGTGATGATCAACCAAACAGTGTCCCCTCTGCCCCGTTAACTATGGACTTACTTGCTGTTCTTTCTACCACTCCATCCACACCTGCTCAAAATGGCGGCACCAAGTCCACAACTAGTGCTGATCAGATTAGAGAACAACAATTCACTTCAGTTGGTGGAGAAAGAAGCAGTGGCAGTTCTCAGTCTCCAAATGATGATTCAGATTGCCAGGAGGATGTTAGAGTTAATTTGCCATTGCAACTTTTTAACTCCTCTCCAGAAGATGACAACCGGTCAAAATTGCCATCTTCACGAAATTATTTTTCATCGGAAAGTAGTAACCCTGTTGACGAAAGGTCGCCATCGTCATCTCCTCCTGTTGTGGAAATGAATTTTGGTTTGCAAGGTGGGATTAGAGGTCTCAATTCTAATAGCATTAAGACTGGAATGGGAGTCAATGCAAATAAGGAAACTAGTCAAAGTCATAGTTGTACTACTATCCCTCTTGATCTCTTTAAAGGGTCAAAATCAAATAACATGATCCAACAAACTAGTTCAGTTCAAAGTGTTCCGTTTAAAGCTGGTTATGCATCTTCAGGCTCTGATTATTCACCTCCCAGTTTGAATTCAGATACTCAGGATCGTACCGGGAGAATAATGTTTAAATTATTTGACAAGCATCCTAGCCATTTGCCAGGAACATTGCGATCACAGATTTACAATTGGCTTTCTACTCGGCCATCAGACTTGGAAAGTTACATAAGGCCTGGCTGTGTCGTCCTATCAATTTATGCTACAATGTCTTCCGCTGCATGGGCGCAACTAGAAGAAAACTTCCTCCAACGTGTTCATTCTTTAATTCATAACTCAGATTCTGATTTATGGAGAAATGGAAGATTTCTTGTTAATTCTGGCAGTCAGTTAGCATCACACAAAGATGGAAAGATACGCATGTGCAAGCCATGGGGAACATGGAGGTCTCCAGAGTTGATATCAGTGTCCCCTTTGGCGATTGTTAGTGGACAAGAAACCTCTATGTCATTGAAGGGAAGAAACCTGTCTGCTCCTGGCACAAAGATTCATTGCACTGGTGCTGACGGTTACACATCATCAGAAGTTATAGGATCTGAAGATCCTGGTATGATCTATGATGAGATAAAGTTGGGTGGTTTTAAAGTTCAGAATACATCTCCTGGTGGTGCTCTAGGTCGCTGTTTCATCGAGGTTGAAAATGGTTTCAAGGGCGACTGTTTTCCAGTGATAATAGCTGATGCATCCATTTGCAAGGAATTGAGACCGCTTGAGTCTGAATTTGACGAAGAGGAAAAAATATGCGATGCCATTTCAGAGGAACATGAATATCATTTTGGGAGGCCCAAGTCAAGGGATGAGGCTTTGCACTTTCTGAATGAGCTTGGTTGGCTGTTTCAAAGGGAAAGGTTCTCGAATGTGCATGAGGTTCCAGATTATTCGCTTGACAGGTTCAAATTTGTACTAACGTTTTCCGTGGAAAGAAACTGTTGCATGTTAGTCAAAACCCTTCTGGATATACTGGTTAGTAAACACTTCGAAGGAGAAAGGTTGTCAACAAGGTCGATGGAGATGCTCAAAGCAATCCAACTCCTAAATAGAGCAGTGAAAAGAAAGTACATAAGCATGATTGATTTGCTCATCCACTATTGTATACCTAGCAAAAATGATACATCCAAGAAATATATATTTCCACCAAATCTTGAGGGCCCTGGTGGTATTACTCCCTTGCATTTGGCTGCATCTACTTCAGATTCGGAGGGAGTTATTGACTCTTTAACAAATGATCCACAAGAGATTGGGTTGAAGTGCTGGGAGACCCTTGTGGATGAAAGTGGGCAGACTCCACATGCTTATGCCGTGATGAGAAATAATTACTCTTATAATATGTTGGTTGCCCGCAAACGTTCTGATAGACAAAGAAGTGAAGTTGCAGTTAGAATTGACAATGAGATACAGCACCCATCACTTGAAGTTGAGCTTATGCAAAAGCGAATTAACCAAGTTAAAAGAGTTGCGGACTCCTGTTCCAAGTGTGCTATTGCCGAAGTTCGCTCCAAAAGAAAATTTTCTGGTTCACGAAGCTGGCTTCACGGTCCCTTTATTCATTCGATGCTAGCTGTTGCTGCTGTTTGTGTATGTGTTTGTGTGTTATTCCGTGGAACTCCTTTCGTAGGCTCAGTTTCTCCCTTCAGGTGGGAAAACTTGGATTATGGCGCACTTTAA 3078 0.4165 MEKLAPPLLPLHPPMLSNPFYNSSNNKKRDLSYDVVHIPNDNWNPKEWNWDSVRFTAKSTVSQQHHTEETLKLNLGGAAVNGGVNSGVNSGVVNRANKRVRSGSPTASYPMCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRFHPLLEFDEGKRSCRRRLAGHNRRRRKTQPDEVANSSSPPLNQQVVAAAANLEIFNLLTAIADGSQGKFEERRSQVPDKEQLVQILNRIPLPADLTAKLLDVGNNLKGKNDNVPMQTSSPYHYCDDQPNSVPSAPLTMDLLAVLSTTPSTPAQNGGTKSTTSADQIREQQFTSVGGERSSGSSQSPNDDSDCQEDVRVNLPLQLFNSSPEDDNRSKLPSSRNYFSSESSNPVDERSPSSSPPVVEMNFGLQGGIRGLNSNSIKTGMGVNANKETSQSHSCTTIPLDLFKGSKSNNMIQQTSSVQSVPFKAGYASSGSDYSPPSLNSDTQDRTGRIMFKLFDKHPSHLPGTLRSQIYNWLSTRPSDLESYIRPGCVVLSIYATMSSAAWAQLEENFLQRVHSLIHNSDSDLWRNGRFLVNSGSQLASHKDGKIRMCKPWGTWRSPELISVSPLAIVSGQETSMSLKGRNLSAPGTKIHCTGADGYTSSEVIGSEDPGMIYDEIKLGGFKVQNTSPGGALGRCFIEVENGFKGDCFPVIIADASICKELRPLESEFDEEEKICDAISEEHEYHFGRPKSRDEALHFLNELGWLFQRERFSNVHEVPDYSLDRFKFVLTFSVERNCCMLVKTLLDILVSKHFEGERLSTRSMEMLKAIQLLNRAVKRKYISMIDLLIHYCIPSKNDTSKKYIFPPNLEGPGGITPLHLAASTSDSEGVIDSLTNDPQEIGLKCWETLVDESGQTPHAYAVMRNNYSYNMLVARKRSDRQRSEVAVRIDNEIQHPSLEVELMQKRINQVKRVADSCSKCAIAEVRSKRKFSGSRSWLHGPFIHSMLAVAAVCVCVCVLFRGTPFVGSVSPFRWENLDYGAL* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2873 1025 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 29 1024 IPR044817 GO:0003677
Tpr1g2873 1025 MobiDBLite consensus disorder prediction 176 198 - -
Tpr1g2873 1025 Pfam SBP domain 112 185 IPR004333 GO:0003677
Tpr1g2873 1025 SUPERFAMILY SBT domain 110 191 IPR036893 GO:0003677|GO:0005634
Tpr1g2873 1025 Gene3D - 103 173 IPR036893 GO:0003677|GO:0005634
Tpr1g2873 1025 ProSiteProfiles Zinc finger SBP-type profile. 109 186 IPR004333 GO:0003677
Tpr1g2873 1025 MobiDBLite consensus disorder prediction 329 400 - -
Tpr1g2873 1025 MobiDBLite consensus disorder prediction 358 400 - -
Tpr1g2873 1025 MobiDBLite consensus disorder prediction 329 347 - -
Tpr1g2873 1025 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 29 1024 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2873 Tpr-Chr1 33100055 33106605 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2873 20 1025 SBP-box Gene Family AT1G20980 51.372 0.0 916
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tpr1g2873 SBP 2.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2873 - - gmx:100819004 1410.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2873 1 33100055 33106605 Tpr1g2873 1 33100055 33106605 ECH