Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2870 ATGGGTAGTTGTGGAAGGGAAGGTGTAGTGAGACAATATGTTAGATCAAAGGTTCCTCGTTTAAGATGGACACCAGAACTTCATCGTTGCTTTGTTTATGCCATTGAAACTCTTGGTGGTCATCAAAAGGCTACTCCTAAGCTTGTTCTTCAATTGATGGATGTTAAAGGGCTAACAATTTCACATGTCAAGAGCCATTTGCAGATGTATAGGAGCATGAGAGGTGACTCATGTAAACAAGATAGGACTACATCCGTACATAAAAGACCATCTTTTCAGGAGCATGATGATGGGTTTGGAGATGATCAATCTATTGGAAAGGAATCTGATTCTCTCTTTAGCAACACTAATTTCTCCCCAAAAAGAGCTAGAATCGAGAAGAAAAGTTCATTCTCAGGAATGATACAATGCAGGGAAAGAATATGTGAAGCAGTTCCAAATCCATACACAACTTTTTATGATTATGTGCAGGACATGGTTCAGCAACAGCAGAAGGGAATAAAAGAGATTTGTGTTGCTTCACAATATTCCACAATCTTTCCCATGCTACCAAAACAAGAAACTCATTTGCTCCAGGTTACAAAATTAAATGAAAAGAAGCATGTGAATGGCAAGATAAAGAGTGTACGTGCAGAAGATGAAGTTATAAAGAGTTGTGAGTTGTCATTATCAATTTCATTGCCCCATCTTTCACCTCAAAGAAGTAATGTTTCTTCAGCCAATGATATGAGAGACTCTGGATTTTGTAACTTTATGGGTTGTTCCAATGTCCAAAACAGAATTAATTTGGACCTATCTTTAGCCATTTGA 810 0.3765 MGSCGREGVVRQYVRSKVPRLRWTPELHRCFVYAIETLGGHQKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGDSCKQDRTTSVHKRPSFQEHDDGFGDDQSIGKESDSLFSNTNFSPKRARIEKKSSFSGMIQCRERICEAVPNPYTTFYDYVQDMVQQQQKGIKEICVASQYSTIFPMLPKQETHLLQVTKLNEKKHVNGKIKSVRAEDEVIKSCELSLSISLPHLSPQRSNVSSANDMRDSGFCNFMGCSNVQNRINLDLSLAI* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2870 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Tpr1g2870 269 MobiDBLite consensus disorder prediction 75 104 - -
Tpr1g2870 269 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Tpr1g2870 269 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Tpr1g2870 269 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Tpr1g2870 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 163 IPR044848 GO:0003700
Tpr1g2870 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 184 269 IPR044848 GO:0003700
Tpr1g2870 269 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 184 269 - -
Tpr1g2870 269 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 163 - -
Tpr1g2870 269 MobiDBLite consensus disorder prediction 74 113 - -
Tpr1g2870 269 Gene3D - 18 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2870 Tpr-Chr1 33076315 33081256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2870 1 74 G2-like Transcription Factor Family AT1G14600 73.418 4.75e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr1g2870 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2870 - - gmx:100810994 333.954