Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2867 ATGGCAGCATCATTTTCAGCTGCTTCTTTCTTTACAATCACTGAAGAGGATCAGAATTTGATGAATCAACAACAAAATTCTTCAACACCATCATCATCAACTACTCCAACTGCACCACCACCTCAGAAGAAAAGAAGAAACCAACCTGGAACACCAAATCCAGATGCAGAGGTGGTAGCACTATCTCCCAAGAGCCTAATGGCAACAAACAGATTTGTATGTGAAGTATGTCAAAAAGGGTTCCAAAGAGAGCAAAATTTGCAACTACATAGAAGAGGACACAATTTGCCTTGGAAACTAAAGCAAAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATGTGTGTCCTGAGCCAACATGTGTTCATCATGACCCTTCAAGAGCACTTGGTGACCTCACTGGAATTAAGAAACACTATTTTAGGAAACATGGTGAAAAAAAGTGGAAGTGTGAAAAGTGTTCTAAGAAGTATGCTGTTCAATCTGATTGGAAGGCTCATTCTAAGACTTGTGGTACTAAGGAGTATAGATGTGATTGTGGCACTCTCTTCTCCAGAAGAGACAGTTTCATCACACATAGAGCCTTTTGTGATGCACTTGCTCAAGAAAGTTCAAGACAACCACAATTACCAAACCAAATCACAAACACTACTTCCCTTAATAACTCCCATCTATTTGGAAACATTAGCAACATATCCTTAGCCTTATCTCAAATCCCTCAACACCAAAACGACAACAACCAATCCACTGAAATCTTGCGTTTTGGTAACACAAGAACTTCACAATTTAACCAAAACATTCTATCTACACCCCCACAACAAACCCTTCATACCCCGCCATTTAATTTCGCCACACAACAACAACCAAACCAAAATTACCATAATGACCATCAATCTCAAACATTCCAAGGACTGATATCATTGTCTCAACTCAACAACAACAACATGTTTTCTGAAAATTTCAACAATGAAGGGACAAATAATTTCTTTTCAGAAAATTCTATAATGTGTGATCCTAATCCTAACCAAACAAGTCCTATCTCTCCTCACATGTCAGCAACAGCTTTGCTACAAAAAGCTTCTCAAATGGGTGCAACTTCAAGCACTAACAACAACAACAATAATAACAACAATGCTTCTTCATTACTAAGTACTAGAGATTTTCTTGGAGTTGGACAAATAGTTATGAGAAATATGAATGGAGGAGGAGTTGGTCAACGTAACATGGAAGCTGAAAAAAATGGATATTTTGGTGTGGGAGGGAACTTTGAGTGA 1272 0.3813 MAASFSAASFFTITEEDQNLMNQQQNSSTPSSSTTPTAPPPQKKRRNQPGTPNPDAEVVALSPKSLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYVCPEPTCVHHDPSRALGDLTGIKKHYFRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAQESSRQPQLPNQITNTTSLNNSHLFGNISNISLALSQIPQHQNDNNQSTEILRFGNTRTSQFNQNILSTPPQQTLHTPPFNFATQQQPNQNYHNDHQSQTFQGLISLSQLNNNNMFSENFNNEGTNNFFSENSIMCDPNPNQTSPISPHMSATALLQKASQMGATSSTNNNNNNNNNASSLLSTRDFLGVGQIVMRNMNGGGVGQRNMEAEKNGYFGVGGNFE* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2867 423 MobiDBLite consensus disorder prediction 15 54 - -
Tpr1g2867 423 Gene3D Classic Zinc Finger 126 206 - -
Tpr1g2867 423 MobiDBLite consensus disorder prediction 15 33 - -
Tpr1g2867 423 Gene3D Classic Zinc Finger 53 119 - -
Tpr1g2867 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Tpr1g2867 423 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 371 - -
Tpr1g2867 423 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Tpr1g2867 423 SMART c2h2final6 148 168 IPR013087 -
Tpr1g2867 423 SMART c2h2final6 72 94 IPR013087 -
Tpr1g2867 423 SMART c2h2final6 113 143 IPR013087 -
Tpr1g2867 423 Pfam Zinc-finger double-stranded RNA-binding 72 94 IPR022755 -
Tpr1g2867 423 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Tpr1g2867 423 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2867 Tpr-Chr1 33047337 33054685 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2867 42 251 IDZ Gene Family AT2G02070 74.886 4.04e-115 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g2867 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2867 K25870 - gmx:100807789 448.743