Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2865 ATGGCAGCTTCTTCATCATCTACTCCTTTCTTAGAAATTAGACAAGAAAATCAAAGTCAGATTACTCAACAACTTCAATCTTCAACAGATGCTTCATCAACTGCTGCTCAACCTTTAGTTCCTCAGAAAAAAAGAAGAAATCAACCTGGAACACCATATCCAGATGCAGAGGTGATAGCACTATCTCCAAAAACTCTAATGGCAACAAATAGATTTGTATGTGAAGTGTGTCAAAAAGGATTTCAAAGGGAACAAAATTTGCAATTACATAGAAGAGGACACAATTTGCCTTGGAAACTAAAGCAAAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCTGAGCCATCTTGTGTTCACCATGACCCTTCAAGAGCACTTGGTGATCTCACTGGAATTAAGAAGCACTTTTCTAGAAAGCATGGTGAGAAAAAGTGGAAATGTGAAAAGTGTTCTAAGAAGTATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACTAGAGAGTATAGATGTGACTGTGGCACTCTCTTCTCAAGGCGTGATAGTTTCATCACACATAGGGCATTTTGTGATGCACTAGCACATGAAAATGCAAGACACCCTTCCAACATGAACCCATTAGCAACTCATCTATTTTCCACAAACCACATAGGTTTAGCCCTAAACCAAAATCAACAACAATCCACAAACAACAATATCTTAACCCTAGGTAATATTCCTTGTACACCAAAATTTGAACATCATTTAATCTCACCTTTGCATGGATCATCATCATCATTTGGTCAAAATCAACAACAATCACCTCAACAACAATCAATGTCTTCATCACCTTTCTTTATAAATGATCCAAATCAAACTTTTCAACAAGACCATCTTCAAGGACCGTTTTCGAATAAACAGCTTCATCTTCATCACGGTCTCATGCAACTTCCGGATCTTCAAGGTAATACCAATAATAATACATCTTCTTCATCGGTATCGCCGTTTAATCTAAGCTTCTTTCCGAATAGTAACAATGCATTGCATGAACAATTCAATAATATAAGTGAAGCTCATCATCATCATGAAGGTTTTTCTTCACTCTTTGGTAATTCATCAATGCAACAAGAGAACATGTTATCATCGCCACACATGTCGGCAACGGCATTGCTTCAAAAAGCTTCTCAAATTGGTTCAACAACTACAACAACTATGAATAACAATGGTGTAGAATCTAATGAAGGAATAAGATCAAGCATGGAAAATGAACACAATCAACATCTACATGGTTTGATGAATTCTCTTGGGAATGGAAACACTTCAATATATGATAACAATAACCTTGGTCAATTTCACAATGTTGAGGAGAATAAAAAGATGTCACAACAAAGTCTTGGTAATTTGTGCTTTGGAGGGTCAGATAAATTGACTTTGGATTTTCTTGGTGTTGGAGGAATGGTGAGAAACATGAGTAATAATACTAGTGGTGGTGGATTTTCTATGAGTGCAATGAACAACATGGATCCTAAAATGGAATCAACACAAGGGAACCAACCTTTTTGA 1560 0.3654 MAASSSSTPFLEIRQENQSQITQQLQSSTDASSTAAQPLVPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHENARHPSNMNPLATHLFSTNHIGLALNQNQQQSTNNNILTLGNIPCTPKFEHHLISPLHGSSSSFGQNQQQSPQQQSMSSSPFFINDPNQTFQQDHLQGPFSNKQLHLHHGLMQLPDLQGNTNNNTSSSSVSPFNLSFFPNSNNALHEQFNNISEAHHHHEGFSSLFGNSSMQQENMLSSPHMSATALLQKASQIGSTTTTTMNNNGVESNEGIRSSMENEHNQHLHGLMNSLGNGNTSIYDNNNLGQFHNVEENKKMSQQSLGNLCFGGSDKLTLDFLGVGGMVRNMSNNTSGGGFSMSAMNNMDPKMESTQGNQPF* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2865 519 Pfam Zinc finger, C2H2 type 72 94 IPR013087 -
Tpr1g2865 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Tpr1g2865 519 MobiDBLite consensus disorder prediction 1 41 - -
Tpr1g2865 519 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 492 - -
Tpr1g2865 519 Gene3D Classic Zinc Finger 55 120 - -
Tpr1g2865 519 SMART c2h2final6 148 168 IPR013087 -
Tpr1g2865 519 SMART c2h2final6 72 94 IPR013087 -
Tpr1g2865 519 SMART c2h2final6 113 143 IPR013087 -
Tpr1g2865 519 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 492 - -
Tpr1g2865 519 MobiDBLite consensus disorder prediction 1 54 - -
Tpr1g2865 519 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Tpr1g2865 519 Gene3D Classic Zinc Finger 126 205 - -
Tpr1g2865 519 MobiDBLite consensus disorder prediction 261 280 - -
Tpr1g2865 519 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2865 Tpr-Chr1 33015806 33021596 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2865 42 498 IDZ Gene Family AT2G02070 46.346 9.14e-121 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g2865 zf-C2H2 0.0049 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2865 K25870 - gmx:100806198 619.772